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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
16.8
nTPM
HPA Brain:
55.4
nTPM
GTEx:
16.8
nTPM
FANTOM5:
41.8
Scaled Tags Per Million
Pig:
59.9
nTPM
Mouse:
69.8
nTPM
Allen mouse:
16.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA030574
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 51.4
1898
Male, age 80, left hemisphere
63.7
2529
Female, age 94, left hemisphere
52.9
1855
Male, age 76, left hemisphere
52.5
1911
Female, age 85, right hemisphere
49.0
2621
Female, age 67, right hemisphere
47.0
2148
Female, age 91, left hemisphere
43.1
Dentate gyrus nTPM: 50.9
2530
Female, age 94, left hemisphere
67.5
2010
Male, age 76, both hemispheres
55.7
1927
Female, age 91, both hemispheres
52.8
2531
Female, age 67, both hemispheres
44.9
2246
Female, age 85, both hemispheres
44.8
2528
Male, age 74, both hemispheres
39.4
Entorhinal gyrus nTPM: 46.7
1938
Female, age 85, left hemisphere
56.5
2764
Male, age 80, right hemisphere
49.8
2613
Female, age 94, left hemisphere
48.8
1787
Male, age 76, left hemisphere
45.9
2117
Female, age 91, right hemisphere
41.2
2686
Male, age 75, right hemisphere
38.4
Hippocampus, CA1 nTPM: 53.7
2749
Male, age 80, left hemisphere
77.9
1873
Female, age 85, both hemispheres
58.0
2527
Male, age 74, both hemispheres
48.7
2045
Male, age 76, both hemispheres
48.3
2082
Female, age 91, right hemisphere
35.6
Hippocampus, CA2 nTPM: 50.1
1892
Male, age 76, both hemispheres
65.5
1963
Male, age 80, left hemisphere
59.0
2249
Male, age 74, both hemispheres
51.7
2437
Female, age 94, left hemisphere
47.8
1940
Female, age 85, left hemisphere
38.9
2113
Female, age 91, right hemisphere
37.9
Hippocampus, CA3 nTPM: 47.7
2137
Male, age 80, left hemisphere
58.0
1867
Male, age 76, both hemispheres
50.5
1891
Female, age 85, both hemispheres
46.0
2861
Female, age 67, both hemispheres
45.6
2436
Male, age 74, both hemispheres
44.3
2620
Female, age 94, left hemisphere
41.7
Parahippocampal cortex nTPM: 51.7
1933
Female, age 85, both hemispheres
60.1
1850
Male, age 80, both hemispheres
56.9
2532
Female, age 72, left hemisphere
56.5
2245
Female, age 91, both hemispheres
56.1
2622
Female, age 67, right hemisphere
55.8
2250
Female, age 67, right hemisphere
51.6
2693
Female, age 94, both hemispheres
51.5
1990
Female, age 91, right hemisphere
45.6
2018
Male, age 76, both hemispheres
45.6
2692
Male, age 74, both hemispheres
37.7
Perirhinal gyrus nTPM: 55.4
1841
Female, age 85, right hemisphere
58.2
1794
Male, age 80, right hemisphere
55.8
1847
Female, age 91, left hemisphere
55.3
2521
Female, age 94, right hemisphere
53.8
2848
Male, age 76, right hemisphere
53.8
Subiculum nTPM: 48.2
2438
Female, age 94, left hemisphere
55.5
1901
Male, age 80, both hemispheres
51.7
1977
Female, age 85, both hemispheres
50.5
2619
Male, age 74, both hemispheres
45.3
2729
Female, age 91, right hemisphere
43.7
2042
Male, age 76, both hemispheres
42.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 16.8
Samples: 197
Max nTPM: 33.4
Min nTPM: 8.5
Std nTPM: 5.2
Median nTPM: 16.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
33.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
31.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
31.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
30.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
29.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
28.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
27.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
26.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
26.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
25.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
25.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
25.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
25.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
25.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
25.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
24.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
24.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
24.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
24.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
24.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
24.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
23.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
23.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
23.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
23.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
23.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
23.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
23.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
23.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
22.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
22.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
22.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
22.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
22.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
21.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
21.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
21.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
21.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
21.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
21.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
21.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
20.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
20.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
20.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
20.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
20.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
20.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
20.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
20.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
20.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
19.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
19.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
19.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
19.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
19.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
19.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
19.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
19.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
19.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
19.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
18.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
18.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
18.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
18.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
18.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
18.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
18.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
18.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
18.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
17.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
17.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
17.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
17.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
17.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
17.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
17.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
17.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
17.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
17.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
17.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
17.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
17.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
16.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
16.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
16.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
16.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
16.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
16.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
16.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
16.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
16.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
16.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
16.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
16.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
16.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
16.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
16.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
16.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
16.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
16.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
15.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
15.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
15.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
15.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
15.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
15.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
15.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
15.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
15.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
15.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
15.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
15.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
15.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
15.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
15.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
15.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
15.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
14.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
14.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
14.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
14.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
14.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
14.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
14.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
14.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
14.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
14.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
14.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
14.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
14.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
13.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
13.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
13.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
13.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
13.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
13.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
13.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
13.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
13.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
13.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
12.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
12.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
12.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
12.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
12.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
12.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
12.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
12.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
12.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
12.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
12.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
11.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
11.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
11.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
11.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
11.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
11.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
11.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
11.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
11.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
11.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
10.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
10.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
10.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
10.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
10.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
10.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
10.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
10.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
10.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
10.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
10.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
9.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
9.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
9.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
9.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
9.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
8.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
8.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
8.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
8.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 69.8
Samples: 4
Max nTPM: 78.5
Min nTPM: 63.3
Sample A
Male
67.4
Sample B
Male
69.8
Sample C
Female
63.3
Sample D
Female
78.5
Hippocampal formation nTPM: 62.8
Samples: 4
Max nTPM: 65.5
Min nTPM: 60.6
Sample A
Male
62.7
Sample B
Male
65.5
Sample C
Female
60.6
Sample D
Female
62.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.