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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDDC2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
72.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
64.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
59.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDDC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.6
953
Tumor
1.5
663
Tumor
1.5
977
Tumor
1.2
131
Tumor
1.1
695
Tumor
1.1
211
Tumor
1.1
965
Tumor
1.0
957
Tumor
1.0
525
Tumor
1.0
487
Tumor
0.9
963
Tumor
0.8
1015
Tumor
0.8
343
Tumor
0.8
427
Tumor
0.8
283
Tumor
0.8
951
Tumor
0.8
867
Tumor
0.7
743
Tumor
0.7
533
Tumor
0.7
923
Tumor
0.7
661
Tumor
0.7
141
Tumor
0.7
1013
Tumor
0.7
342
Normal
0.6
297
Tumor
0.6
498
Normal
0.6
353
Tumor
0.6
917
Tumor
0.6
395
Tumor
0.6
271
Tumor
0.6
192
Normal
0.6
135
Tumor
0.5
344
Normal
0.5
358
Normal
0.5
721
Tumor
0.5
267
Tumor
0.5
413
Tumor
0.5
354
Normal
0.5
921
Tumor
0.5
311
Tumor
0.5
483
Tumor
0.5
755
Tumor
0.5
355
Tumor
0.4
385
Tumor
0.4
478
Normal
0.4
477
Tumor
0.4
685
Tumor
0.4
571
Tumor
0.4
978
Normal
0.4
357
Tumor
0.4
492
Normal
0.4
975
Tumor
0.4
188
Normal
0.4
724
Normal
0.4
352
Normal
0.4
814
Normal
0.4
535
Tumor
0.4
493
Tumor
0.3
494
Normal
0.3
697
Tumor
0.3
865
Tumor
0.3
391
Tumor
0.3
515
Tumor
0.3
268
Normal
0.3
924
Normal
0.3
813
Tumor
0.3
461
Tumor
0.3
538
Normal
0.3
943
Tumor
0.3
138
Normal
0.3
536
Normal
0.3
136
Normal
0.3
516
Normal
0.3
484
Normal
0.3
351
Tumor
0.3
861
Tumor
0.3
146
Normal
0.3
224
Normal
0.3
474
Normal
0.3
272
Normal
0.3
868
Normal
0.3
126
Normal
0.3
1021
Tumor
0.3
262
Normal
0.2
383
Tumor
0.2
862
Normal
0.2
741
Tumor
0.2
328
Normal
0.2
212
Normal
0.2
563
Tumor
0.2
415
Tumor
0.2
472
Normal
0.2
227
Tumor
0.2
537
Tumor
0.2
713
Tumor
0.2
423
Tumor
0.2
866
Normal
0.2
815
Tumor
0.2
411
Tumor
0.2
517
Tumor
0.2
137
Tumor
0.2
722
Normal
0.2
523
Tumor
0.2
497
Tumor
0.2
341
Tumor
0.2
416
Normal
0.2
958
Normal
0.2
874
Normal
0.2
686
Normal
0.2
331
Tumor
0.2
365
Tumor
0.2
223
Tumor
0.2
714
Normal
0.1
362
Normal
0.1
132
Normal
0.1
1043
Tumor
0.1
217
Tumor
0.1
364
Normal
0.1
278
Normal
0.1
473
Tumor
0.1
628
Normal
0.1
431
Tumor
0.1
367
Tumor
0.1
386
Normal
0.1
187
Tumor
0.1
925
Tumor
0.1
447
Tumor
0.1
366
Normal
0.1
916
Normal
0.1
546
Normal
0.1
231
Tumor
0.1
534
Normal
0.1
313
Tumor
0.1
1046
Normal
0.1
647
Tumor
0.1
127
Tumor
0.1
185
Tumor
0.1
966
Normal
0.1
312
Normal
0.1
285
Tumor
0.1
142
Normal
0.1
214
Normal
0.1
488
Normal
0.1
221
Tumor
0.1
384
Normal
0.1
145
Tumor
0.1
852
Normal
0.1
955
Tumor
0.1
222
Normal
0.0
1026
Normal
0.0
434
Normal
0.0
375
Tumor
0.0
915
Tumor
0.0
1044
Normal
0.0
881
Tumor
0.0
956
Normal
0.0
392
Normal
0.0
277
Tumor
0.0
284
Normal
0.0
918
Normal
0.0
191
Tumor
0.0
1031
Tumor
0.0
125
Tumor
0.0
983
Tumor
0.0
1014
Normal
0.0
526
Normal
0.0
627
Tumor
0.0
817
Tumor
0.0
448
Normal
0.0
412
Normal
0.0
1045
Tumor
0.0
451
Tumor
0.0
218
Normal
0.0
738
Normal
0.0
471
Tumor
0.0
361
Tumor
0.0
387
Tumor
0.0
567
Tumor
0.0
984
Normal
0.0
213
Tumor
0.0
573
Tumor
0.0
327
Tumor
0.0
922
Normal
-0.1
816
Normal
-0.1
968
Normal
-0.1
514
Normal
-0.1
976
Normal
-0.1
356
Normal
-0.1
858
Normal
-0.1
332
Normal
-0.1
147
Tumor
-0.1
524
Normal
-0.1
463
Tumor
-0.1
863
Tumor
-0.1
518
Normal
-0.1
462
Normal
-0.1
964
Normal
-0.1
877
Tumor
-0.1
616
Normal
-0.1
363
Tumor
-0.1
111
Normal
-0.1
635
Tumor
-0.1
818
Normal
-0.1
911
Tumor
-0.1
228
Normal
-0.1
777
Tumor
-0.1
528
Normal
-0.1
672
Normal
-0.1
124
Normal
-0.1
954
Normal
-0.1
696
Normal
-0.1
394
Normal
-0.1
481
Tumor
-0.1
944
Normal
-0.1
452
Normal
-0.1
1027
Tumor
-0.2
873
Tumor
-0.2
433
Tumor
-0.2
662
Normal
-0.2
823
Tumor
-0.2
114
Normal
-0.2
396
Normal
-0.2
636
Normal
-0.2
148
Normal
-0.2
455
Tumor
-0.2
468
Normal
-0.2
456
Normal
-0.2
444
Normal
-0.2
938
Normal
-0.2
368
Normal
-0.2
967
Tumor
-0.2
545
Tumor
-0.2
128
Normal
-0.2
464
Normal
-0.2
298
Normal
-0.2
558
Normal
-0.2
926
Normal
-0.2
914
Normal
-0.2
1016
Normal
-0.2
376
Normal
-0.2
952
Normal
-0.2
443
Tumor
-0.2
574
Normal
-0.2
435
Tumor
-0.2
286
Normal
-0.2
666
Normal
-0.2
883
Tumor
-0.2
232
Normal
-0.2
642
Normal
-0.2
728
Normal
-0.2
698
Normal
-0.2
425
Tumor
-0.2
715
Tumor
-0.2
467
Tumor
-0.2
1028
Normal
-0.3
428
Normal
-0.3
388
Normal
-0.3
424
Normal
-0.3
527
Tumor
-0.3
258
Normal
-0.3
824
Normal
-0.3
426
Normal
-0.3
465
Tumor
-0.3
913
Tumor
-0.3
196
Normal
-0.3
257
Tumor
-0.3
671
Tumor
-0.3
314
Normal
-0.3
664
Normal
-0.3
756
Normal
-0.3
161
Tumor
-0.3
261
Tumor
-0.3
445
Tumor
-0.3
785
Tumor
-0.3
723
Tumor
-0.3
422
Normal
-0.3
568
Normal
-0.3
186
Normal
-0.3
195
Tumor
-0.4
864
Normal
-0.4
572
Normal
-0.4
615
Tumor
-0.4
778
Normal
-0.4
482
Normal
-0.4
648
Normal
-0.4
414
Normal
-0.4
564
Normal
-0.4
884
Normal
-0.4
878
Normal
-0.4
446
Normal
-0.4
554
Normal
-0.4
421
Tumor
-0.4
432
Normal
-0.4
641
Tumor
-0.4
982
Normal
-0.4
737
Tumor
-0.4
745
Tumor
-0.5
172
Normal
-0.5
162
Normal
-0.5
1022
Normal
-0.5
912
Normal
-0.5
727
Tumor
-0.5
882
Normal
-0.5
513
Tumor
-0.5
1025
Tumor
-0.5
466
Normal
-0.5
746
Normal
-0.5
1032
Normal
-0.5
617
Tumor
-0.5
112
Tumor
-0.5
851
Tumor
-0.6
618
Normal
-0.6
436
Normal
-0.6
857
Tumor
-0.6
393
Tumor
-0.6
553
Tumor
-0.6
742
Normal
-0.7
786
Normal
-0.7
557
Tumor
-0.7
113
Tumor
-0.7
1041
Tumor
-0.7
665
Tumor
-0.7
1042
Normal
-0.7
981
Tumor
-0.7
123
Tumor
-0.8
937
Tumor
-0.9
171
Tumor
-1.0
716
Normal
-2.4
744
Normal
-3.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
