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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
543.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 267.7
1984
Male, age 76, both hemispheres
359.7
2301
Female, age 85, both hemispheres
247.3
2188
Female, age 91, both hemispheres
245.7
2090
Male, age 80, both hemispheres
218.0
Dorsal cochlear nucleus nTPM: 250.9
2058
Male, age 76, both hemispheres
294.4
2187
Female, age 91, both hemispheres
278.4
2370
Male, age 61, both hemispheres
271.7
2802
Male, age 74, right hemisphere
231.7
2378
Male, age 80, both hemispheres
178.3
Dorsal tegmental nucleus nTPM: 257.6
2083
Male, age 80, both hemispheres
326.1
1936
Male, age 76, left hemisphere
256.7
2326
Male, age 74, both hemispheres
230.7
2358
Male, age 61, both hemispheres
216.8
Dorsolateral tegmental area nTPM: 274.5
2751
Female, age 85, both hemispheres
322.2
2654
Male, age 80, both hemispheres
311.5
2141
Male, age 76, both hemispheres
301.2
2360
Male, age 74, both hemispheres
277.3
2337
Male, age 61, both hemispheres
160.3
Kolliker-Fuse nucleus nTPM: 353.2
2163
Male, age 80, both hemispheres
528.1
2793
Female, age 91, left hemisphere
296.5
2315
Male, age 76, right hemisphere
235.0
Lateral lemniscal nuclei nTPM: 458.1
2036
Male, age 80, both hemispheres
539.7
2169
Male, age 76, both hemispheres
522.7
2746
Female, age 85, left hemisphere
486.2
2453
Male, age 74, right hemisphere
461.0
2320
Female, age 91, left hemisphere
280.8
Lateral parabrachial nucleus nTPM: 346.0
2139
Female, age 85, right hemisphere
523.0
2013
Male, age 80, both hemispheres
345.5
2790
Male, age 61, both hemispheres
345.3
2792
Male, age 76, both hemispheres
170.4
Lateral vestibular nucleus nTPM: 369.4
2184
Male, age 76, both hemispheres
488.8
2311
Male, age 80, both hemispheres
250.1
Locus coeruleus nTPM: 470.1
2123
Female, age 91, both hemispheres
632.4
2720
Male, age 74, both hemispheres
533.2
2014
Male, age 55, unknown
509.1
2317
Female, age 72, unknown
435.9
2788
Male, age 74, unknown
407.6
1980
Male, age 76, both hemispheres
393.2
2162
Male, age 80, both hemispheres
379.3
Medial parabrachial nucleus nTPM: 332.0
2156
Male, age 61, both hemispheres
365.1
2854
Male, age 80, both hemispheres
344.9
2170
Female, age 91, both hemispheres
342.7
2463
Female, age 85, right hemisphere
330.7
2786
Male, age 76, both hemispheres
276.8
Medial periolivary nuclei nTPM: 435.7
2171
Female, age 85, both hemispheres
677.4
2063
Male, age 76, both hemispheres
594.3
2791
Male, age 74, right hemisphere
384.4
2081
Male, age 80, both hemispheres
288.2
2458
Female, age 91, both hemispheres
233.9
Motor facial nucleus nTPM: 416.9
2062
Male, age 76, both hemispheres
616.0
2365
Male, age 74, right hemisphere
486.6
2327
Male, age 80, both hemispheres
400.9
2697
Female, age 85, both hemispheres
371.7
2126
Male, age 61, both hemispheres
353.3
2795
Female, age 91, both hemispheres
273.1
Motor trigeminal nucleus nTPM: 336.7
2079
Male, age 80, both hemispheres
478.5
2560
Male, age 74, both hemispheres
365.7
2335
Male, age 61, both hemispheres
310.0
2309
Male, age 76, both hemispheres
284.4
2321
Female, age 91, both hemispheres
244.9
Nuclei of the trapezoid body nTPM: 528.4
2159
Male, age 61, both hemispheres
771.3
2735
Female, age 85, both hemispheres
672.5
1983
Male, age 76, both hemispheres
533.4
2166
Male, age 80, both hemispheres
381.1
2368
Female, age 91, both hemispheres
283.8
Nucleus raphe magnus nTPM: 543.8
2160
Male, age 61, both hemispheres
900.5
2172
Female, age 85, both hemispheres
692.9
2455
Male, age 74, both hemispheres
569.3
2328
Male, age 80, both hemispheres
395.8
2051
Male, age 76, both hemispheres
394.2
2459
Female, age 91, both hemispheres
310.2
Paramedian reticular nucleus nTPM: 402.7
2050
Female, age 85, both hemispheres
523.2
2313
Male, age 61, both hemispheres
430.8
2057
Male, age 80, both hemispheres
418.4
2052
Male, age 76, both hemispheres
238.2
Pedunculopontine tegmental nucleus nTPM: 303.4
1921
Female, age 85, both hemispheres
347.2
2334
Male, age 80, both hemispheres
305.9
2338
Male, age 61, both hemispheres
257.0
Pontine nuclei nTPM: 526.9
2727
Male, age 61, right hemisphere
841.6
2787
Female, age 85, both hemispheres
721.0
1863
Male, age 55, unknown
621.6
2109
Female, age 72, unknown
545.6
1968
Male, age 76, left hemisphere
506.9
2454
Male, age 74, left hemisphere
382.4
2115
Male, age 80, left hemisphere
333.6
2319
Female, age 91, both hemispheres
262.5
Pontine raphe nucleus nTPM: 444.1
2122
Female, age 85, midline
547.4
2853
Male, age 76, midline
340.7
Posteroventral cochlear nucleus nTPM: 264.2
2752
Female, age 85, both hemispheres
438.9
2070
Male, age 76, both hemispheres
328.3
2371
Male, age 61, both hemispheres
249.8
2341
Male, age 80, both hemispheres
163.5
2135
Female, age 91, both hemispheres
140.7
Principal sensory trigeminal nucleus nTPM: 484.3
2158
Male, age 61, both hemispheres
759.6
2008
Male, age 80, left hemisphere
529.1
2324
Male, age 76, both hemispheres
380.6
2367
Female, age 91, left hemisphere
268.1
Reticular pontine nucleus, caudal nTPM: 356.0
2332
Male, age 80, right hemisphere
473.5
2092
Male, age 76, both hemispheres
407.4
2559
Male, age 74, both hemispheres
293.9
2457
Female, age 91, both hemispheres
249.1
Reticular pontine nucleus, oral nTPM: 368.2
2361
Male, age 74, both hemispheres
498.5
2012
Female, age 85, both hemispheres
463.9
1939
Male, age 80, both hemispheres
349.3
2167
Male, age 76, both hemispheres
299.6
2366
Female, age 91, both hemispheres
229.6
Reticulotegmental nucleus nTPM: 351.3
2325
Male, age 76, both hemispheres
431.0
2452
Male, age 74, both hemispheres
357.9
2333
Male, age 80, both hemispheres
320.0
2322
Female, age 91, both hemispheres
296.5
Spinal trigeminal nucleus, oral nTPM: 394.7
2737
Female, age 85, both hemispheres
454.1
2164
Male, age 80, both hemispheres
427.6
1978
Male, age 76, both hemispheres
302.3
Subcoeruleus area nTPM: 349.7
2323
Female, age 91, left hemisphere
414.9
2089
Male, age 76, left hemisphere
405.1
1958
Male, age 80, both hemispheres
402.5
2451
Male, age 74, both hemispheres
272.5
2369
Female, age 85, left hemisphere
253.5
Superior olive nTPM: 424.4
1875
Female, age 85, both hemispheres
600.9
2364
Male, age 74, right hemisphere
468.2
2020
Male, age 76, both hemispheres
393.8
2329
Male, age 80, right hemisphere
354.8
2561
Female, age 91, both hemispheres
304.1
Ventral periolivary nuclei nTPM: 454.4
2130
Female, age 85, both hemispheres
577.6
2165
Male, age 80, both hemispheres
523.4
2023
Male, age 76, both hemispheres
370.8
2794
Female, age 91, left hemisphere
345.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 361.3
2449
Male, age 74, both hemispheres
509.2
1959
Male, age 76, both hemispheres
402.5
2840
Female, age 85, both hemispheres
388.2
2161
Male, age 80, both hemispheres
353.5
2359
Male, age 61, both hemispheres
291.6
2456
Female, age 91, both hemispheres
223.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
488.6
Pig sample
Sample description
nTPM
Pons nTPM: 488.6
Samples: 4
Max nTPM: 715.6
Min nTPM: 388.0
Sample A
Female
715.6
Sample B
Female
388.0
Sample C
Male
438.9
Sample D
Male
411.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.