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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
214.6
nTPM
HPA Brain:
551.6
nTPM
GTEx:
214.6
nTPM
FANTOM5:
175.4
Scaled Tags Per Million
Pig:
505.5
nTPM
Mouse:
729.9
nTPM
Allen mouse:
25.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
551.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 290.8
1898
Male, age 80, left hemisphere
449.5
2621
Female, age 67, right hemisphere
315.3
2148
Female, age 91, left hemisphere
268.3
1855
Male, age 76, left hemisphere
260.2
2529
Female, age 94, left hemisphere
227.7
1911
Female, age 85, right hemisphere
224.1
Dentate gyrus nTPM: 344.3
1927
Female, age 91, both hemispheres
426.0
2530
Female, age 94, left hemisphere
360.5
2010
Male, age 76, both hemispheres
339.8
2528
Male, age 74, both hemispheres
328.5
2531
Female, age 67, both hemispheres
308.5
2246
Female, age 85, both hemispheres
302.3
Entorhinal gyrus nTPM: 415.7
2764
Male, age 80, right hemisphere
580.2
2613
Female, age 94, left hemisphere
498.0
1938
Female, age 85, left hemisphere
431.6
1787
Male, age 76, left hemisphere
370.8
2686
Male, age 75, right hemisphere
348.5
2117
Female, age 91, right hemisphere
265.1
Hippocampus, CA1 nTPM: 364.4
2749
Male, age 80, left hemisphere
563.6
2082
Female, age 91, right hemisphere
349.8
1873
Female, age 85, both hemispheres
322.6
2045
Male, age 76, both hemispheres
308.7
2527
Male, age 74, both hemispheres
277.5
Hippocampus, CA2 nTPM: 363.2
1892
Male, age 76, both hemispheres
475.5
1963
Male, age 80, left hemisphere
373.9
2437
Female, age 94, left hemisphere
366.6
1940
Female, age 85, left hemisphere
346.8
2249
Male, age 74, both hemispheres
310.1
2113
Female, age 91, right hemisphere
306.5
Hippocampus, CA3 nTPM: 356.7
2620
Female, age 94, left hemisphere
442.0
2137
Male, age 80, left hemisphere
410.5
1867
Male, age 76, both hemispheres
402.1
2436
Male, age 74, both hemispheres
325.3
1891
Female, age 85, both hemispheres
290.5
2861
Female, age 67, both hemispheres
269.5
Parahippocampal cortex nTPM: 418.8
1850
Male, age 80, both hemispheres
580.4
1990
Female, age 91, right hemisphere
492.6
2245
Female, age 91, both hemispheres
462.6
2693
Female, age 94, both hemispheres
430.2
1933
Female, age 85, both hemispheres
427.8
2532
Female, age 72, left hemisphere
421.2
2250
Female, age 67, right hemisphere
403.6
2018
Male, age 76, both hemispheres
357.2
2622
Female, age 67, right hemisphere
334.7
2692
Male, age 74, both hemispheres
277.2
Perirhinal gyrus nTPM: 551.6
1847
Female, age 91, left hemisphere
698.0
1794
Male, age 80, right hemisphere
655.7
1841
Female, age 85, right hemisphere
538.1
2521
Female, age 94, right hemisphere
460.6
2848
Male, age 76, right hemisphere
405.7
Subiculum nTPM: 308.7
1977
Female, age 85, both hemispheres
431.9
1901
Male, age 80, both hemispheres
357.5
2619
Male, age 74, both hemispheres
304.8
2438
Female, age 94, left hemisphere
295.1
2042
Male, age 76, both hemispheres
235.3
2729
Female, age 91, right hemisphere
227.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
214.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 214.6
Samples: 197
Max nTPM: 579.9
Min nTPM: 71.4
Std nTPM: 108.7
Median nTPM: 179.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
579.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
515.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
515.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
504.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
482.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
481.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
479.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
464.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
461.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
447.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
422.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
413.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
406.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
398.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
396.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
396.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
393.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
383.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
382.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
375.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
372.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
368.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
367.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
358.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
354.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
349.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
348.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
346.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
344.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
342.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
339.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
328.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
325.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
324.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
320.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
315.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
308.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
305.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
301.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
301.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
300.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
300.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
297.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
297.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
294.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
289.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
288.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
280.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
273.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
271.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
271.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
269.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
264.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
263.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
262.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
260.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
259.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
257.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
256.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
254.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
253.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
250.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
247.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
245.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
241.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
241.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
240.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
238.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
238.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
235.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
234.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
234.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
233.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
232.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
228.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
227.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
225.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
225.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
224.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
218.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
216.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
215.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
213.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
212.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
211.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
209.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
209.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
207.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
200.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
199.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
198.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
198.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
198.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
192.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
186.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
184.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
184.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
182.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
179.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
179.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
178.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
175.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
175.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
174.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
172.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
172.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
172.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
171.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
171.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
170.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
170.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
167.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
167.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
165.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
165.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
163.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
163.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
160.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
159.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
159.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
157.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
156.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
156.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
155.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
153.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
152.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
151.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
151.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
149.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
148.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
148.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
146.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
143.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
143.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
142.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
140.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
139.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
137.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
137.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
137.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
136.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
134.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
132.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
132.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
131.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
130.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
130.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
129.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
127.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
123.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
123.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
122.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
121.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
121.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
120.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
119.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
118.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
117.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
115.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
115.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
115.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
114.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
113.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
111.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
110.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
109.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
109.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
108.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
106.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
106.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
104.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
104.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
102.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
101.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
101.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
101.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
101.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
100.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
100.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
99.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
99.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
96.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
94.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
93.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
92.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
91.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
91.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
90.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
89.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
87.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
84.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
84.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
83.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
81.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
78.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
76.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
71.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
729.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 683.9
Samples: 4
Max nTPM: 724.4
Min nTPM: 668.2
Sample A
Male
669.9
Sample B
Male
672.9
Sample C
Female
668.2
Sample D
Female
724.4
Hippocampal formation nTPM: 729.9
Samples: 4
Max nTPM: 786.8
Min nTPM: 699.4
Sample A
Male
699.4
Sample B
Male
705.8
Sample C
Female
786.8
Sample D
Female
727.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.