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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.3
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
148.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
82.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
62.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
58.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
55.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
54.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
52.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.6
331
Tumor
1.3
967
Tumor
1.3
567
Tumor
1.2
557
Tumor
1.2
635
Tumor
1.2
537
Tumor
1.1
685
Tumor
1.1
267
Tumor
1.1
351
Tumor
1.1
285
Tumor
1.0
951
Tumor
1.0
865
Tumor
1.0
227
Tumor
1.0
815
Tumor
1.0
367
Tumor
0.9
661
Tumor
0.9
957
Tumor
0.9
483
Tumor
0.9
387
Tumor
0.8
427
Tumor
0.8
493
Tumor
0.8
671
Tumor
0.8
473
Tumor
0.8
983
Tumor
0.8
743
Tumor
0.8
1041
Tumor
0.7
851
Tumor
0.7
391
Tumor
0.7
525
Tumor
0.7
697
Tumor
0.7
211
Tumor
0.7
817
Tumor
0.7
1021
Tumor
0.7
113
Tumor
0.7
727
Tumor
0.7
1025
Tumor
0.6
123
Tumor
0.6
535
Tumor
0.6
413
Tumor
0.6
477
Tumor
0.6
861
Tumor
0.6
513
Tumor
0.6
877
Tumor
0.5
545
Tumor
0.5
385
Tumor
0.5
665
Tumor
0.5
375
Tumor
0.5
171
Tumor
0.5
355
Tumor
0.5
327
Tumor
0.5
283
Tumor
0.5
395
Tumor
0.5
724
Normal
0.4
1013
Tumor
0.4
873
Tumor
0.4
715
Tumor
0.4
523
Tumor
0.4
187
Tumor
0.4
223
Tumor
0.4
737
Tumor
0.4
353
Tumor
0.4
131
Tumor
0.4
471
Tumor
0.4
937
Tumor
0.4
814
Normal
0.3
527
Tumor
0.3
467
Tumor
0.3
517
Tumor
0.3
923
Tumor
0.3
883
Tumor
0.3
363
Tumor
0.3
573
Tumor
0.3
135
Tumor
0.3
975
Tumor
0.3
423
Tumor
0.3
1031
Tumor
0.3
881
Tumor
0.3
497
Tumor
0.3
571
Tumor
0.3
112
Tumor
0.3
745
Tumor
0.3
213
Tumor
0.3
443
Tumor
0.3
425
Tumor
0.2
361
Tumor
0.2
1015
Tumor
0.2
411
Tumor
0.2
451
Tumor
0.2
913
Tumor
0.2
433
Tumor
0.2
963
Tumor
0.2
313
Tumor
0.2
533
Tumor
0.2
813
Tumor
0.2
217
Tumor
0.2
221
Tumor
0.2
127
Tumor
0.2
925
Tumor
0.2
695
Tumor
0.2
943
Tumor
0.2
383
Tumor
0.2
145
Tumor
0.1
357
Tumor
0.1
393
Tumor
0.1
455
Tumor
0.1
915
Tumor
0.1
563
Tumor
0.1
191
Tumor
0.1
311
Tumor
0.1
911
Tumor
0.1
341
Tumor
0.1
755
Tumor
0.1
617
Tumor
0.1
297
Tumor
0.1
195
Tumor
0.1
641
Tumor
0.1
647
Tumor
0.1
663
Tumor
0.1
137
Tumor
0.1
615
Tumor
0.1
515
Tumor
0.1
261
Tumor
0.1
785
Tumor
0.0
435
Tumor
0.0
231
Tumor
0.0
1027
Tumor
0.0
421
Tumor
0.0
257
Tumor
0.0
447
Tumor
0.0
461
Tumor
0.0
981
Tumor
0.0
867
Tumor
0.0
977
Tumor
0.0
857
Tumor
0.0
465
Tumor
0.0
953
Tumor
0.0
713
Tumor
0.0
431
Tumor
0.0
445
Tumor
-0.1
415
Tumor
-0.1
721
Tumor
-0.1
777
Tumor
-0.1
1028
Normal
-0.1
147
Tumor
-0.1
917
Tumor
-0.1
277
Tumor
-0.1
228
Normal
-0.2
553
Tumor
-0.2
1045
Tumor
-0.2
481
Tumor
-0.2
823
Tumor
-0.2
741
Tumor
-0.2
185
Tumor
-0.2
141
Tumor
-0.2
463
Tumor
-0.2
284
Normal
-0.2
944
Normal
-0.2
966
Normal
-0.2
564
Normal
-0.2
534
Normal
-0.2
964
Normal
-0.2
536
Normal
-0.2
1014
Normal
-0.2
516
Normal
-0.2
518
Normal
-0.2
1032
Normal
-0.2
858
Normal
-0.2
161
Tumor
-0.2
912
Normal
-0.2
524
Normal
-0.2
271
Tumor
-0.2
1043
Tumor
-0.2
487
Tumor
-0.3
222
Normal
-0.3
384
Normal
-0.3
572
Normal
-0.3
491
Tumor
-0.3
484
Normal
-0.3
554
Normal
-0.3
1046
Normal
-0.3
1022
Normal
-0.3
954
Normal
-0.3
824
Normal
-0.3
494
Normal
-0.3
538
Normal
-0.3
466
Normal
-0.3
968
Normal
-0.3
955
Tumor
-0.3
698
Normal
-0.3
286
Normal
-0.3
628
Normal
-0.3
232
Normal
-0.3
1026
Normal
-0.3
526
Normal
-0.3
376
Normal
-0.3
714
Normal
-0.3
328
Normal
-0.3
882
Normal
-0.3
1042
Normal
-0.3
938
Normal
-0.3
852
Normal
-0.3
866
Normal
-0.3
818
Normal
-0.3
862
Normal
-0.3
514
Normal
-0.3
365
Tumor
-0.3
616
Normal
-0.3
396
Normal
-0.3
662
Normal
-0.3
728
Normal
-0.3
148
Normal
-0.3
958
Normal
-0.3
648
Normal
-0.3
362
Normal
-0.3
356
Normal
-0.3
224
Normal
-0.3
666
Normal
-0.3
422
Normal
-0.3
722
Normal
-0.3
492
Normal
-0.3
636
Normal
-0.3
125
Tumor
-0.3
426
Normal
-0.3
434
Normal
-0.3
448
Normal
-0.3
172
Normal
-0.3
188
Normal
-0.3
864
Normal
-0.3
344
Normal
-0.4
558
Normal
-0.4
472
Normal
-0.4
212
Normal
-0.4
114
Normal
-0.4
976
Normal
-0.4
664
Normal
-0.4
392
Normal
-0.4
352
Normal
-0.4
1044
Normal
-0.4
956
Normal
-0.4
388
Normal
-0.4
982
Normal
-0.4
574
Normal
-0.4
978
Normal
-0.4
474
Normal
-0.4
196
Normal
-0.4
162
Normal
-0.4
446
Normal
-0.4
916
Normal
-0.4
478
Normal
-0.4
424
Normal
-0.4
546
Normal
-0.4
672
Normal
-0.4
528
Normal
-0.4
142
Normal
-0.4
984
Normal
-0.4
786
Normal
-0.4
696
Normal
-0.4
744
Normal
-0.4
412
Normal
-0.4
686
Normal
-0.4
482
Normal
-0.4
394
Normal
-0.4
568
Normal
-0.4
627
Tumor
-0.4
816
Normal
-0.4
124
Normal
-0.4
128
Normal
-0.4
452
Normal
-0.4
444
Normal
-0.4
498
Normal
-0.4
218
Normal
-0.4
354
Normal
-0.4
132
Normal
-0.4
738
Normal
-0.4
428
Normal
-0.4
186
Normal
-0.4
456
Normal
-0.4
642
Normal
-0.4
884
Normal
-0.4
922
Normal
-0.4
368
Normal
-0.4
952
Normal
-0.4
924
Normal
-0.4
1016
Normal
-0.4
436
Normal
-0.4
136
Normal
-0.4
918
Normal
-0.4
268
Normal
-0.5
488
Normal
-0.5
746
Normal
-0.5
878
Normal
-0.5
868
Normal
-0.5
366
Normal
-0.5
343
Tumor
-0.5
414
Normal
-0.5
416
Normal
-0.5
723
Tumor
-0.5
386
Normal
-0.5
462
Normal
-0.5
926
Normal
-0.5
214
Normal
-0.5
262
Normal
-0.5
138
Normal
-0.5
468
Normal
-0.5
618
Normal
-0.5
364
Normal
-0.5
464
Normal
-0.5
298
Normal
-0.5
716
Normal
-0.5
358
Normal
-0.5
778
Normal
-0.5
742
Normal
-0.5
126
Normal
-0.5
342
Normal
-0.5
146
Normal
-0.5
921
Tumor
-0.5
278
Normal
-0.5
272
Normal
-0.5
874
Normal
-0.5
192
Normal
-0.5
756
Normal
-0.5
258
Normal
-0.5
111
Normal
-0.6
312
Normal
-0.6
314
Normal
-0.6
914
Normal
-0.6
432
Normal
-0.6
332
Normal
-0.7
863
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
