We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.7
nTPM
HPA Brain:
70.0
nTPM
GTEx:
21.7
nTPM
FANTOM5:
60.9
Scaled Tags Per Million
Pig:
22.8
nTPM
Mouse:
3.7
nTPM
Allen mouse:
1.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 51.4
2666
Male, age 74, left hemisphere
89.4
2019
Male, age 18, unknown
66.0
2828
Female, age 72, unknown
54.9
2411
Female, age 72, unknown
54.7
1870
Female, age 42, unknown
50.0
1833
Male, age 53, unknown
49.1
1830
Male, age 51, unknown
47.1
2586
Male, age 75, left hemisphere
38.1
1827
Male, age 72, unknown
33.0
2219
Male, age 76, both hemispheres
31.8
Dorsal raphe nucleus nTPM: 43.1
2750
Male, age 76, both hemispheres
51.8
1828
Male, age 53, unknown
45.8
2047
Male, age 72, unknown
43.2
2016
Female, age 72, unknown
40.7
2298
Female, age 72, unknown
34.0
Inferior colliculus nTPM: 46.7
1890
Male, age 53, unknown
64.0
2097
Female, age 72, unknown
49.6
1848
Female, age 42, unknown
40.5
2849
Male, age 72, unknown
32.6
Median raphe nucleus nTPM: 38.3
2220
Male, age 76, midline
38.3
Periaquaductal grey, anterior nTPM: 42.8
2502
Female, age 75, unknown
47.6
1947
Male, age 18, unknown
44.2
1795
Male, age 51, unknown
36.5
Periaquaductal grey, dorsal nTPM: 33.8
2464
Female, age 72, unknown
43.5
1831
Male, age 72, unknown
41.3
1840
Male, age 53, unknown
26.1
2850
Male, age 76, both hemispheres
24.3
Periaquaductal grey, lateral nTPM: 36.5
2053
Male, age 18, unknown
41.0
2272
Male, age 74, both hemispheres
36.9
2140
Male, age 76, both hemispheres
31.4
Pretectal area nTPM: 37.6
1817
Female, age 42, unknown
54.6
2007
Male, age 72, unknown
50.1
2316
Male, age 76, right hemisphere
48.4
1815
Male, age 53, unknown
42.8
1944
Female, age 72, unknown
38.8
1816
Male, age 51, unknown
36.1
2667
Female, age 75, unknown
34.3
2224
Female, age 72, unknown
34.0
2825
Male, age 18, unknown
31.2
2273
Male, age 74, both hemispheres
23.6
2407
Male, age 75, both hemispheres
19.4
Red nucleus nTPM: 70.0
2588
Male, age 74, left hemisphere
93.1
1821
Female, age 72, unknown
79.0
1904
Male, age 53, unknown
77.8
2823
Male, age 76, right hemisphere
77.3
1954
Female, age 42, unknown
76.9
2769
Male, age 72, unknown
73.1
2227
Male, age 72, unknown
71.8
1865
Male, age 51, unknown
66.8
2503
Female, age 72, unknown
66.3
2785
Male, age 18, unknown
60.1
2725
Female, age 75, unknown
52.9
2584
Male, age 75, left hemisphere
44.9
Substantia nigra nTPM: 52.6
2665
Male, age 74, both hemispheres
103.8
1851
Male, age 51, unknown
63.9
2241
Male, age 72, unknown
51.8
2590
Female, age 75, unknown
49.3
2409
Female, age 72, unknown
48.1
1916
Female, age 42, unknown
47.5
1889
Female, age 72, unknown
45.4
2699
Male, age 18, unknown
43.3
2583
Male, age 75, right hemisphere
38.4
1941
Male, age 53, unknown
34.7
Superior colliculus nTPM: 39.7
2587
Male, age 74, left hemisphere
52.0
2668
Female, age 75, unknown
48.3
2087
Female, age 72, unknown
46.4
1895
Male, age 76, right hemisphere
45.4
1995
Male, age 72, unknown
39.5
1839
Male, age 51, unknown
38.0
2261
Male, age 18, unknown
37.6
1913
Female, age 42, unknown
37.0
1796
Male, age 53, unknown
32.8
2664
Male, age 75, both hemispheres
20.5
Ventral tegmental area nTPM: 53.0
2223
Female, age 72, unknown
58.7
2410
Female, age 72, unknown
56.4
2021
Male, age 53, unknown
55.2
2218
Male, age 76, both hemispheres
52.8
1942
Male, age 51, unknown
52.6
1915
Female, age 42, unknown
42.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 21.7
Samples: 139
Max nTPM: 138.1
Min nTPM: 3.3
Std nTPM: 17.9
Median nTPM: 16.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
138.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
94.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
78.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
71.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
64.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
60.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
53.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
52.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
49.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
48.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
48.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
46.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
46.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
42.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
42.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
39.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
34.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
33.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
32.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
31.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
30.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
30.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
29.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
29.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
27.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
27.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
26.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
25.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
25.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
25.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
24.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
24.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
24.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
23.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
23.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
23.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
23.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
22.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
22.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
22.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
22.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
22.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
21.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
21.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
20.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
19.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
19.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
19.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
18.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
18.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
18.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
18.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
18.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
17.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
17.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
15.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
15.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
15.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
15.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
14.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
14.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
14.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
14.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
13.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
13.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
12.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
12.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
12.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
12.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
12.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
12.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
12.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
12.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
11.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
11.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
11.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
10.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
10.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
10.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
10.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
9.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
8.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
8.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
8.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
8.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
7.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
7.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
7.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
6.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
6.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
6.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
6.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
5.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.3
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 3.7
Samples: 4
Max nTPM: 4.4
Min nTPM: 3.0
Sample A
Male
3.0
Sample B
Male
3.2
Sample C
Female
4.3
Sample D
Female
4.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.