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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.6
nTPM
HPA Brain:
48.5
nTPM
GTEx:
15.6
nTPM
FANTOM5:
40.4
Scaled Tags Per Million
Pig:
13.3
nTPM
Mouse:
4.2
nTPM
Allen mouse:
0.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001815
Antibody HPA002082
Antibody CAB001694
Antibody CAB072874
Antibody CAB072875
Glial cells
Not detected
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Not detected
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 42.7
2529
Female, age 94, left hemisphere
59.0
1911
Female, age 85, right hemisphere
43.8
2621
Female, age 67, right hemisphere
42.6
1855
Male, age 76, left hemisphere
39.9
2148
Female, age 91, left hemisphere
36.5
1898
Male, age 80, left hemisphere
34.3
Dentate gyrus nTPM: 44.8
2530
Female, age 94, left hemisphere
66.1
2531
Female, age 67, both hemispheres
57.4
2010
Male, age 76, both hemispheres
41.8
2528
Male, age 74, both hemispheres
39.5
2246
Female, age 85, both hemispheres
32.4
1927
Female, age 91, both hemispheres
31.6
Entorhinal gyrus nTPM: 30.9
2686
Male, age 75, right hemisphere
38.4
2117
Female, age 91, right hemisphere
33.9
1787
Male, age 76, left hemisphere
32.6
2613
Female, age 94, left hemisphere
28.6
2764
Male, age 80, right hemisphere
26.2
1938
Female, age 85, left hemisphere
25.5
Hippocampus, CA1 nTPM: 35.5
2527
Male, age 74, both hemispheres
44.3
2082
Female, age 91, right hemisphere
41.1
1873
Female, age 85, both hemispheres
35.0
2045
Male, age 76, both hemispheres
31.8
2749
Male, age 80, left hemisphere
25.4
Hippocampus, CA2 nTPM: 43.8
2437
Female, age 94, left hemisphere
60.0
1963
Male, age 80, left hemisphere
51.7
2113
Female, age 91, right hemisphere
46.3
2249
Male, age 74, both hemispheres
43.2
1892
Male, age 76, both hemispheres
31.8
1940
Female, age 85, left hemisphere
29.6
Hippocampus, CA3 nTPM: 48.5
2861
Female, age 67, both hemispheres
85.4
1867
Male, age 76, both hemispheres
48.3
2620
Female, age 94, left hemisphere
41.0
1891
Female, age 85, both hemispheres
40.2
2137
Male, age 80, left hemisphere
38.2
2436
Male, age 74, both hemispheres
38.1
Parahippocampal cortex nTPM: 31.7
2018
Male, age 76, both hemispheres
47.0
2622
Female, age 67, right hemisphere
37.7
2245
Female, age 91, both hemispheres
34.3
1990
Female, age 91, right hemisphere
34.1
2692
Male, age 74, both hemispheres
33.5
2532
Female, age 72, left hemisphere
32.5
1850
Male, age 80, both hemispheres
26.7
2693
Female, age 94, both hemispheres
25.9
1933
Female, age 85, both hemispheres
25.5
2250
Female, age 67, right hemisphere
20.4
Perirhinal gyrus nTPM: 27.3
1841
Female, age 85, right hemisphere
35.0
1794
Male, age 80, right hemisphere
27.2
2521
Female, age 94, right hemisphere
27.0
1847
Female, age 91, left hemisphere
25.4
2848
Male, age 76, right hemisphere
21.9
Subiculum nTPM: 36.8
2042
Male, age 76, both hemispheres
50.2
2619
Male, age 74, both hemispheres
38.5
2438
Female, age 94, left hemisphere
37.2
2729
Female, age 91, right hemisphere
32.6
1977
Female, age 85, both hemispheres
31.7
1901
Male, age 80, both hemispheres
30.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 15.6
Samples: 197
Max nTPM: 70.3
Min nTPM: 1.3
Std nTPM: 11.2
Median nTPM: 11.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
70.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
54.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
49.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
46.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
44.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
43.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
40.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
40.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
39.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
38.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
38.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
37.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
36.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
35.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
35.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
32.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
32.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
32.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
31.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
31.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
30.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
30.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
30.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
28.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
28.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
28.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
27.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
27.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
26.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
26.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
26.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
25.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
25.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
25.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
25.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
24.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
24.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
23.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
23.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
22.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
22.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
22.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
22.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
21.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
21.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
20.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
20.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
20.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
20.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
19.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
19.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
18.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
18.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
18.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
18.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
18.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
18.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
17.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
16.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
16.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
16.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
16.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
16.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
16.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
16.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
16.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
15.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
15.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
15.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
15.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
15.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
15.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
14.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
14.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
14.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
14.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
14.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
14.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
13.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
13.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
13.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
13.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
13.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
13.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
12.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
12.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
12.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
12.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
12.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
12.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
12.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
12.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
12.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
12.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
11.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
11.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
11.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
11.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
11.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
11.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
11.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
11.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
10.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
10.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
10.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
10.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
10.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
10.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
10.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
10.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
9.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
9.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
9.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
9.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
9.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
9.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
9.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
9.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
8.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
8.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
8.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
8.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
8.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
8.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
8.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
8.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
8.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
8.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
8.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
7.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
7.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
7.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
7.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
7.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
7.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
7.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
7.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
7.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
7.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
7.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
7.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
7.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
7.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
7.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
7.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
6.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
6.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
6.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
6.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
6.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
6.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
6.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
6.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
6.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
6.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
6.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
6.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
6.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
6.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
6.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
5.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
5.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
5.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
5.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
5.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
5.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
5.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
5.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
5.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
4.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
4.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
4.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
4.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
4.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
4.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
4.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
3.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
3.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
3.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
2.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
2.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
2.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 4.2
Samples: 4
Max nTPM: 5.9
Min nTPM: 2.4
Sample A
Male
4.5
Sample B
Male
2.4
Sample C
Female
3.8
Sample D
Female
5.9
Hippocampal formation nTPM: 2.6
Samples: 4
Max nTPM: 3.2
Min nTPM: 1.4
Sample A
Male
1.4
Sample B
Male
2.9
Sample C
Female
2.8
Sample D
Female
3.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.