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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
748.2
nTPM
HPA Brain:
283.3
nTPM
GTEx:
748.2
nTPM
FANTOM5:
207.3
Scaled Tags Per Million
Pig:
219.5
nTPM
Mouse:
281.2
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
283.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 250.7
1870
Female, age 42, unknown
303.3
2411
Female, age 72, unknown
302.8
2666
Male, age 74, left hemisphere
258.5
1827
Male, age 72, unknown
247.0
1833
Male, age 53, unknown
245.6
1830
Male, age 51, unknown
235.9
2586
Male, age 75, left hemisphere
234.7
2019
Male, age 18, unknown
234.2
2828
Female, age 72, unknown
234.0
2219
Male, age 76, both hemispheres
210.7
Dorsal raphe nucleus nTPM: 267.8
2298
Female, age 72, unknown
325.2
2016
Female, age 72, unknown
281.4
2750
Male, age 76, both hemispheres
253.8
1828
Male, age 53, unknown
248.3
2047
Male, age 72, unknown
230.2
Inferior colliculus nTPM: 247.9
2097
Female, age 72, unknown
277.4
1890
Male, age 53, unknown
271.7
1848
Female, age 42, unknown
235.8
2849
Male, age 72, unknown
206.8
Median raphe nucleus nTPM: 221.3
2220
Male, age 76, midline
221.3
Periaquaductal grey, anterior nTPM: 275.6
2502
Female, age 75, unknown
337.5
1947
Male, age 18, unknown
258.9
1795
Male, age 51, unknown
230.3
Periaquaductal grey, dorsal nTPM: 248.7
1831
Male, age 72, unknown
264.7
1840
Male, age 53, unknown
246.4
2850
Male, age 76, both hemispheres
243.6
2464
Female, age 72, unknown
240.1
Periaquaductal grey, lateral nTPM: 244.2
2053
Male, age 18, unknown
298.7
2140
Male, age 76, both hemispheres
224.5
2272
Male, age 74, both hemispheres
209.3
Pretectal area nTPM: 248.1
2316
Male, age 76, right hemisphere
302.2
2224
Female, age 72, unknown
269.9
1815
Male, age 53, unknown
261.4
1817
Female, age 42, unknown
259.4
1816
Male, age 51, unknown
254.1
2007
Male, age 72, unknown
250.8
1944
Female, age 72, unknown
243.1
2407
Male, age 75, both hemispheres
231.9
2825
Male, age 18, unknown
228.6
2667
Female, age 75, unknown
214.0
2273
Male, age 74, both hemispheres
213.8
Red nucleus nTPM: 272.2
1821
Female, age 72, unknown
340.7
2503
Female, age 72, unknown
322.7
1865
Male, age 51, unknown
288.7
1904
Male, age 53, unknown
288.3
2769
Male, age 72, unknown
286.3
2584
Male, age 75, left hemisphere
276.7
2227
Male, age 72, unknown
262.9
2725
Female, age 75, unknown
251.0
2785
Male, age 18, unknown
247.7
2823
Male, age 76, right hemisphere
235.8
1954
Female, age 42, unknown
233.6
2588
Male, age 74, left hemisphere
232.2
Substantia nigra nTPM: 283.3
1851
Male, age 51, unknown
352.5
2409
Female, age 72, unknown
333.8
2241
Male, age 72, unknown
313.4
2699
Male, age 18, unknown
300.8
2590
Female, age 75, unknown
287.0
1916
Female, age 42, unknown
279.0
2665
Male, age 74, both hemispheres
268.9
1889
Female, age 72, unknown
265.6
1941
Male, age 53, unknown
246.3
2583
Male, age 75, right hemisphere
186.1
Superior colliculus nTPM: 269.6
2587
Male, age 74, left hemisphere
328.4
1913
Female, age 42, unknown
308.6
1995
Male, age 72, unknown
297.3
2261
Male, age 18, unknown
264.9
2668
Female, age 75, unknown
261.3
1839
Male, age 51, unknown
255.1
1796
Male, age 53, unknown
251.0
2664
Male, age 75, both hemispheres
246.4
1895
Male, age 76, right hemisphere
245.1
2087
Female, age 72, unknown
238.0
Ventral tegmental area nTPM: 277.9
2410
Female, age 72, unknown
306.2
1915
Female, age 42, unknown
305.6
2021
Male, age 53, unknown
294.1
2223
Female, age 72, unknown
281.0
1942
Male, age 51, unknown
261.0
2218
Male, age 76, both hemispheres
219.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
748.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 748.2
Samples: 139
Max nTPM: 2158.3
Min nTPM: 271.9
Std nTPM: 303.8
Median nTPM: 673.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2158.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1996.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1688.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1655.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1370.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1364.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1347.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1326.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1241.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1215.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1178.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1173.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1128.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1082.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1072.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1067.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1066.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1047.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1027.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1024.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1021.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
980.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
959.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
949.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
947.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
938.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
934.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
931.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
927.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
920.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
908.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
905.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
901.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
898.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
893.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
882.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
881.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
875.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
866.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
845.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
833.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
826.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
820.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
805.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
804.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
802.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
802.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
797.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
797.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
796.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
793.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
791.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
786.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
777.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
775.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
773.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
763.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
748.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
744.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
743.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
742.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
740.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
736.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
730.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
714.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
711.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
700.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
687.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
686.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
673.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
666.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
666.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
663.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
662.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
656.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
652.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
630.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
629.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
628.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
624.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
618.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
615.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
607.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
605.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
592.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
592.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
591.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
589.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
588.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
585.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
580.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
577.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
576.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
568.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
563.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
562.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
561.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
560.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
560.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
556.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
554.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
553.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
552.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
547.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
541.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
540.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
536.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
520.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
515.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
514.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
509.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
505.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
498.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
497.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
497.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
495.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
494.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
487.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
483.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
474.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
474.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
472.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
471.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
468.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
462.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
460.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
460.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
455.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
437.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
435.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
434.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
431.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
415.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
407.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
400.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
382.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
365.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
334.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
271.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
281.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 281.3
Samples: 4
Max nTPM: 326.7
Min nTPM: 224.6
Sample A
Male
326.7
Sample B
Male
294.0
Sample C
Female
224.6
Sample D
Female
279.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.