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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
528.5
nTPM
HPA Brain:
220.4
nTPM
GTEx:
528.5
nTPM
FANTOM5:
123.0
Scaled Tags Per Million
Pig:
182.5
nTPM
Mouse:
358.6
nTPM
Allen mouse:
0.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA005985
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
220.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 220.4
1898
Male, age 80, left hemisphere
278.6
1911
Female, age 85, right hemisphere
226.0
2529
Female, age 94, left hemisphere
224.4
1855
Male, age 76, left hemisphere
215.5
2621
Female, age 67, right hemisphere
211.0
2148
Female, age 91, left hemisphere
166.8
Dentate gyrus nTPM: 211.9
2010
Male, age 76, both hemispheres
266.3
2530
Female, age 94, left hemisphere
265.1
2528
Male, age 74, both hemispheres
195.0
1927
Female, age 91, both hemispheres
194.1
2246
Female, age 85, both hemispheres
180.9
2531
Female, age 67, both hemispheres
170.3
Entorhinal gyrus nTPM: 191.9
2686
Male, age 75, right hemisphere
224.5
1787
Male, age 76, left hemisphere
213.1
2117
Female, age 91, right hemisphere
210.6
1938
Female, age 85, left hemisphere
178.7
2764
Male, age 80, right hemisphere
174.6
2613
Female, age 94, left hemisphere
150.1
Hippocampus, CA1 nTPM: 207.7
2045
Male, age 76, both hemispheres
230.6
1873
Female, age 85, both hemispheres
228.4
2082
Female, age 91, right hemisphere
199.6
2749
Male, age 80, left hemisphere
198.3
2527
Male, age 74, both hemispheres
181.5
Hippocampus, CA2 nTPM: 209.9
1963
Male, age 80, left hemisphere
234.3
1892
Male, age 76, both hemispheres
221.1
2249
Male, age 74, both hemispheres
212.1
2437
Female, age 94, left hemisphere
200.9
1940
Female, age 85, left hemisphere
195.9
2113
Female, age 91, right hemisphere
195.4
Hippocampus, CA3 nTPM: 184.4
1867
Male, age 76, both hemispheres
244.6
1891
Female, age 85, both hemispheres
237.6
2436
Male, age 74, both hemispheres
191.6
2137
Male, age 80, left hemisphere
163.5
2861
Female, age 67, both hemispheres
154.2
2620
Female, age 94, left hemisphere
115.0
Parahippocampal cortex nTPM: 185.8
2018
Male, age 76, both hemispheres
285.4
2250
Female, age 67, right hemisphere
202.7
1850
Male, age 80, both hemispheres
201.0
1990
Female, age 91, right hemisphere
195.9
1933
Female, age 85, both hemispheres
182.5
2692
Male, age 74, both hemispheres
178.1
2245
Female, age 91, both hemispheres
166.5
2532
Female, age 72, left hemisphere
158.5
2693
Female, age 94, both hemispheres
144.4
2622
Female, age 67, right hemisphere
142.9
Perirhinal gyrus nTPM: 191.4
1847
Female, age 91, left hemisphere
224.3
1841
Female, age 85, right hemisphere
211.5
1794
Male, age 80, right hemisphere
199.8
2848
Male, age 76, right hemisphere
177.4
2521
Female, age 94, right hemisphere
144.0
Subiculum nTPM: 220.1
2042
Male, age 76, both hemispheres
282.1
2438
Female, age 94, left hemisphere
228.5
1977
Female, age 85, both hemispheres
223.4
1901
Male, age 80, both hemispheres
217.2
2729
Female, age 91, right hemisphere
203.8
2619
Male, age 74, both hemispheres
165.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
528.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 528.5
Samples: 197
Max nTPM: 1410.6
Min nTPM: 223.1
Std nTPM: 196.0
Median nTPM: 477.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1410.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1373.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1247.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1162.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1053.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
994.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
957.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
898.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
884.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
850.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
839.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
838.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
829.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
827.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
805.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
803.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
800.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
784.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
778.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
773.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
773.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
773.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
770.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
755.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
748.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
747.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
743.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
736.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
733.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
727.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
726.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
710.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
709.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
706.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
703.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
702.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
689.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
684.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
675.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
671.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
652.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
650.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
646.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
643.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
641.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
640.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
636.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
629.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
627.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
621.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
620.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
619.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
613.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
609.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
608.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
604.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
599.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
599.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
595.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
592.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
592.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
588.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
581.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
579.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
578.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
577.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
563.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
559.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
558.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
551.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
532.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
531.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
530.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
529.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
527.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
527.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
526.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
526.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
524.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
523.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
521.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
517.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
516.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
512.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
511.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
508.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
505.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
501.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
501.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
494.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
493.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
493.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
490.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
485.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
484.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
483.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
483.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
479.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
477.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
476.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
474.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
474.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
473.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
473.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
472.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
471.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
468.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
467.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
466.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
463.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
457.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
449.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
448.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
446.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
444.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
444.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
440.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
440.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
437.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
436.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
435.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
435.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
435.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
431.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
429.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
428.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
428.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
426.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
424.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
423.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
421.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
418.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
418.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
415.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
414.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
414.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
410.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
407.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
407.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
406.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
405.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
405.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
403.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
394.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
392.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
391.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
389.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
389.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
389.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
388.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
387.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
386.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
384.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
378.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
377.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
376.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
374.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
370.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
370.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
368.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
367.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
367.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
365.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
359.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
354.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
353.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
352.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
350.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
347.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
345.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
344.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
343.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
342.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
342.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
340.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
335.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
334.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
333.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
332.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
329.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
327.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
325.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
324.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
321.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
319.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
318.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
317.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
310.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
306.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
301.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
291.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
286.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
282.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
281.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
270.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
263.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
223.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
358.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 334.6
Samples: 4
Max nTPM: 358.6
Min nTPM: 307.7
Sample A
Male
358.6
Sample B
Male
346.2
Sample C
Female
307.7
Sample D
Female
325.9
Hippocampal formation nTPM: 358.6
Samples: 4
Max nTPM: 380.9
Min nTPM: 332.1
Sample A
Male
380.9
Sample B
Male
360.0
Sample C
Female
332.1
Sample D
Female
361.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.