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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
76.2
nTPM
HPA Brain:
732.5
nTPM
GTEx:
76.2
nTPM
FANTOM5:
65.0
Scaled Tags Per Million
Pig:
329.3
nTPM
Mouse:
255.2
nTPM
Allen mouse:
8.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
732.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 428.2
2586
Male, age 75, left hemisphere
824.9
2828
Female, age 72, unknown
465.8
1827
Male, age 72, unknown
446.6
2219
Male, age 76, both hemispheres
412.1
1833
Male, age 53, unknown
406.6
2019
Male, age 18, unknown
368.1
2666
Male, age 74, left hemisphere
353.2
1830
Male, age 51, unknown
343.9
1870
Female, age 42, unknown
341.4
2411
Female, age 72, unknown
319.2
Dorsal raphe nucleus nTPM: 459.0
2047
Male, age 72, unknown
569.5
1828
Male, age 53, unknown
547.2
2016
Female, age 72, unknown
429.5
2298
Female, age 72, unknown
412.2
2750
Male, age 76, both hemispheres
336.6
Inferior colliculus nTPM: 732.5
1848
Female, age 42, unknown
897.5
2097
Female, age 72, unknown
704.5
1890
Male, age 53, unknown
664.1
2849
Male, age 72, unknown
663.9
Median raphe nucleus nTPM: 306.8
2220
Male, age 76, midline
306.8
Periaquaductal grey, anterior nTPM: 472.7
2502
Female, age 75, unknown
577.7
1947
Male, age 18, unknown
449.9
1795
Male, age 51, unknown
390.4
Periaquaductal grey, dorsal nTPM: 480.3
1840
Male, age 53, unknown
615.8
2464
Female, age 72, unknown
610.3
2850
Male, age 76, both hemispheres
429.8
1831
Male, age 72, unknown
265.2
Periaquaductal grey, lateral nTPM: 367.5
2140
Male, age 76, both hemispheres
477.3
2053
Male, age 18, unknown
421.8
2272
Male, age 74, both hemispheres
203.3
Pretectal area nTPM: 439.4
1817
Female, age 42, unknown
660.9
1816
Male, age 51, unknown
534.3
2007
Male, age 72, unknown
500.8
1944
Female, age 72, unknown
458.3
2667
Female, age 75, unknown
455.2
2825
Male, age 18, unknown
450.1
1815
Male, age 53, unknown
440.3
2316
Male, age 76, right hemisphere
414.6
2224
Female, age 72, unknown
394.2
2407
Male, age 75, both hemispheres
296.1
2273
Male, age 74, both hemispheres
228.8
Red nucleus nTPM: 494.3
1821
Female, age 72, unknown
645.6
1954
Female, age 42, unknown
630.9
2769
Male, age 72, unknown
630.5
2227
Male, age 72, unknown
606.3
2588
Male, age 74, left hemisphere
599.2
2503
Female, age 72, unknown
508.0
1865
Male, age 51, unknown
488.4
2823
Male, age 76, right hemisphere
483.2
1904
Male, age 53, unknown
475.8
2785
Male, age 18, unknown
324.5
2725
Female, age 75, unknown
309.4
2584
Male, age 75, left hemisphere
230.1
Substantia nigra nTPM: 408.3
1916
Female, age 42, unknown
618.7
1889
Female, age 72, unknown
564.4
2699
Male, age 18, unknown
455.8
2241
Male, age 72, unknown
437.0
1851
Male, age 51, unknown
394.5
2665
Male, age 74, both hemispheres
381.2
1941
Male, age 53, unknown
329.9
2583
Male, age 75, right hemisphere
308.2
2409
Female, age 72, unknown
301.4
2590
Female, age 75, unknown
292.1
Superior colliculus nTPM: 444.7
2668
Female, age 75, unknown
664.9
1895
Male, age 76, right hemisphere
535.8
2087
Female, age 72, unknown
499.3
2664
Male, age 75, both hemispheres
498.9
1839
Male, age 51, unknown
485.6
2261
Male, age 18, unknown
482.7
1796
Male, age 53, unknown
419.0
2587
Male, age 74, left hemisphere
328.4
1913
Female, age 42, unknown
271.0
1995
Male, age 72, unknown
261.9
Ventral tegmental area nTPM: 346.4
2410
Female, age 72, unknown
408.0
1915
Female, age 42, unknown
388.3
2223
Female, age 72, unknown
368.8
1942
Male, age 51, unknown
332.8
2218
Male, age 76, both hemispheres
309.6
2021
Male, age 53, unknown
270.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 76.2
Samples: 139
Max nTPM: 249.5
Min nTPM: 5.4
Std nTPM: 53.4
Median nTPM: 62.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
249.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
234.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
230.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
229.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
225.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
193.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
192.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
180.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
179.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
175.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
173.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
161.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
158.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
156.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
155.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
149.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
140.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
133.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
132.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
132.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
130.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
130.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
129.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
126.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
126.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
121.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
119.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
114.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
112.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
111.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
110.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
109.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
108.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
104.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
101.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
99.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
97.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
96.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
95.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
94.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
94.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
93.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
91.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
90.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
86.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
85.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
85.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
84.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
81.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
81.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
81.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
80.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
80.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
80.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
77.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
76.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
75.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
74.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
72.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
70.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
69.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
69.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
69.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
68.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
68.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
66.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
66.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
64.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
62.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
62.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
58.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
58.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
58.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
58.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
55.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
54.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
53.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
52.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
52.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
52.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
52.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
51.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
50.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
50.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
49.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
48.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
48.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
47.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
46.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
46.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
46.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
46.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
45.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
43.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
42.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
40.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
40.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
38.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
36.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
36.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
35.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
34.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
34.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
34.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
34.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
33.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
32.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
31.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
31.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
30.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
29.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
29.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
26.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
26.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
25.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
22.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
22.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
20.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
19.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
18.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
17.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
17.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
16.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
15.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
14.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
13.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
12.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
10.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
255.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 255.2
Samples: 4
Max nTPM: 265.0
Min nTPM: 233.4
Sample A
Male
233.4
Sample B
Male
265.0
Sample C
Female
259.2
Sample D
Female
263.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.