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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
185.0
nTPM
HPA Brain:
921.9
nTPM
GTEx:
185.0
nTPM
FANTOM5:
1215.3
Scaled Tags Per Million
Pig:
908.1
nTPM
Mouse:
595.8
nTPM
Allen mouse:
15.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA009172
Antibody HPA067499
Antibody CAB002574
Glial cells
Low
Medium
Medium
Neuronal cells
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
921.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 886.6
2148
Female, age 91, left hemisphere
1013.2
1911
Female, age 85, right hemisphere
907.9
2529
Female, age 94, left hemisphere
901.2
2621
Female, age 67, right hemisphere
855.3
1855
Male, age 76, left hemisphere
837.3
1898
Male, age 80, left hemisphere
804.5
Dentate gyrus nTPM: 693.8
1927
Female, age 91, both hemispheres
949.8
2246
Female, age 85, both hemispheres
861.3
2528
Male, age 74, both hemispheres
723.1
2010
Male, age 76, both hemispheres
577.5
2530
Female, age 94, left hemisphere
555.3
2531
Female, age 67, both hemispheres
495.8
Entorhinal gyrus nTPM: 761.8
1938
Female, age 85, left hemisphere
1243.5
2117
Female, age 91, right hemisphere
980.4
2686
Male, age 75, right hemisphere
608.0
2764
Male, age 80, right hemisphere
603.4
1787
Male, age 76, left hemisphere
591.4
2613
Female, age 94, left hemisphere
543.8
Hippocampus, CA1 nTPM: 833.0
2527
Male, age 74, both hemispheres
1252.1
1873
Female, age 85, both hemispheres
795.9
2749
Male, age 80, left hemisphere
744.7
2082
Female, age 91, right hemisphere
738.5
2045
Male, age 76, both hemispheres
634.1
Hippocampus, CA2 nTPM: 728.7
2249
Male, age 74, both hemispheres
888.4
2113
Female, age 91, right hemisphere
854.6
1940
Female, age 85, left hemisphere
706.4
1963
Male, age 80, left hemisphere
654.7
2437
Female, age 94, left hemisphere
647.3
1892
Male, age 76, both hemispheres
620.8
Hippocampus, CA3 nTPM: 727.0
2436
Male, age 74, both hemispheres
892.5
2861
Female, age 67, both hemispheres
859.7
1891
Female, age 85, both hemispheres
817.7
2137
Male, age 80, left hemisphere
680.1
1867
Male, age 76, both hemispheres
669.5
2620
Female, age 94, left hemisphere
442.4
Parahippocampal cortex nTPM: 921.9
2692
Male, age 74, both hemispheres
1346.8
1933
Female, age 85, both hemispheres
1241.2
2250
Female, age 67, right hemisphere
1191.2
2622
Female, age 67, right hemisphere
1115.3
2245
Female, age 91, both hemispheres
871.1
1990
Female, age 91, right hemisphere
865.2
1850
Male, age 80, both hemispheres
755.0
2693
Female, age 94, both hemispheres
711.3
2532
Female, age 72, left hemisphere
602.4
2018
Male, age 76, both hemispheres
519.5
Perirhinal gyrus nTPM: 780.8
1841
Female, age 85, right hemisphere
969.4
1847
Female, age 91, left hemisphere
961.2
1794
Male, age 80, right hemisphere
894.0
2521
Female, age 94, right hemisphere
637.7
2848
Male, age 76, right hemisphere
441.5
Subiculum nTPM: 769.8
2619
Male, age 74, both hemispheres
1209.5
2729
Female, age 91, right hemisphere
1006.3
1977
Female, age 85, both hemispheres
755.4
2438
Female, age 94, left hemisphere
637.2
1901
Male, age 80, both hemispheres
569.1
2042
Male, age 76, both hemispheres
441.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 185.0
Samples: 197
Max nTPM: 680.7
Min nTPM: 15.9
Std nTPM: 129.2
Median nTPM: 157.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
680.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
624.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
589.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
569.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
533.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
514.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
485.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
474.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
469.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
462.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
435.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
418.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
414.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
410.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
402.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
389.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
386.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
374.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
373.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
330.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
329.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
326.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
306.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
302.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
301.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
301.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
296.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
294.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
293.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
292.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
292.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
292.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
288.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
287.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
286.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
285.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
285.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
281.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
279.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
279.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
276.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
275.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
274.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
274.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
274.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
270.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
270.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
267.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
264.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
258.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
256.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
252.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
251.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
249.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
247.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
245.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
244.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
243.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
237.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
236.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
236.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
235.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
233.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
230.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
230.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
226.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
222.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
222.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
222.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
218.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
214.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
213.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
213.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
208.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
208.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
205.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
204.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
201.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
201.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
201.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
198.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
198.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
198.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
193.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
191.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
187.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
183.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
177.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
172.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
172.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
171.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
170.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
166.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
166.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
165.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
160.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
159.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
158.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
157.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
157.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
155.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
152.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
149.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
147.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
147.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
147.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
147.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
146.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
146.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
145.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
143.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
143.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
142.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
139.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
137.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
136.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
132.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
131.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
130.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
129.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
127.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
127.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
125.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
125.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
121.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
119.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
118.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
114.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
112.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
111.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
111.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
111.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
110.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
108.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
106.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
105.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
103.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
95.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
91.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
91.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
91.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
90.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
89.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
85.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
81.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
80.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
79.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
79.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
77.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
76.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
75.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
75.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
72.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
72.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
72.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
72.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
71.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
69.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
68.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
66.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
66.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
66.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
65.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
63.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
63.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
62.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
59.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
59.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
58.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
57.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
57.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
55.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
51.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
49.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
48.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
46.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
45.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
44.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
42.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
40.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
37.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
37.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
32.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
32.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
29.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
27.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
27.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
27.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
26.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
23.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
22.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
22.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
21.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
19.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
19.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
19.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
15.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
595.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 595.9
Samples: 4
Max nTPM: 666.4
Min nTPM: 552.5
Sample A
Male
666.4
Sample B
Male
552.5
Sample C
Female
560.1
Sample D
Female
604.5
Hippocampal formation nTPM: 444.2
Samples: 4
Max nTPM: 492.2
Min nTPM: 408.4
Sample A
Male
492.2
Sample B
Male
457.0
Sample C
Female
408.4
Sample D
Female
419.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.