We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HGFAC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0037
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
54%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
35%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
336.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
285.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
197.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
183.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
182.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
155.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
152.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
151.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
144.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
142.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
136.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
132.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
129.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
127.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
126.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
126.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
124.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
122.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
115.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
112.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
110.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
107.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
106.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
104.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
99.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
97.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
95.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
94.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
92.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
88.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
86.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
86.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
85.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
85.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
85.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
85.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
83.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
83.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
82.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
78.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
78.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
77.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
75.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
74.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
73.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
73.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
72.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
71.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
70.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
69.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
68.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
68.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
68.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
67.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
67.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
66.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
65.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
65.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
65.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
62.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
60.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
59.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
58.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
58.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
58.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
55.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
54.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
53.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
51.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
51.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
48.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
47.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
45.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
44.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
40.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HGFAC is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.00089
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
71%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
45%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.5
Number of samples
231
Samples
Sample
Description
TPM
DO45101
0 years, male, NA, stage:2, alive, 1680 days
491.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
449.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
360.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
355.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
295.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
257.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
246.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
243.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
222.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
210.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
198.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
183.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
182.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
182.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
172.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
166.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
166.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
163.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
159.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
155.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
146.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
143.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
140.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
139.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
133.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
132.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
129.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
124.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
122.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
122.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
122.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
121.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
120.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
120.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
118.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
117.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
115.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
112.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
106.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
106.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
106.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
104.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
96.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
96.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
96.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
91.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
89.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
88.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
85.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
83.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
82.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
80.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
79.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
78.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
76.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
74.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
74.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
71.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
65.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
64.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
57.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
47.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
44.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
686
Normal
1.5
312
Normal
1.4
343
Tumor
1.4
627
Tumor
1.3
616
Normal
1.2
746
Normal
1.1
391
Tumor
1.1
192
Normal
1.1
327
Tumor
1.1
222
Normal
1.1
862
Normal
1.0
877
Tumor
1.0
615
Tumor
1.0
921
Tumor
1.0
268
Normal
1.0
388
Normal
0.9
227
Tumor
0.9
342
Normal
0.9
258
Normal
0.9
228
Normal
0.9
278
Normal
0.9
392
Normal
0.9
221
Tumor
0.9
642
Normal
0.9
354
Normal
0.9
311
Tumor
0.9
191
Tumor
0.8
297
Tumor
0.8
128
Normal
0.8
432
Normal
0.8
332
Normal
0.8
574
Normal
0.8
358
Normal
0.8
868
Normal
0.8
573
Tumor
0.7
571
Tumor
0.7
344
Normal
0.7
563
Tumor
0.7
365
Tumor
0.7
662
Normal
0.7
186
Normal
0.7
1046
Normal
0.7
636
Normal
0.7
277
Tumor
0.7
567
Tumor
0.7
648
Normal
0.7
286
Normal
0.7
214
Normal
0.7
863
Tumor
0.7
618
Normal
0.6
938
Normal
0.6
384
Normal
0.6
396
Normal
0.6
386
Normal
0.6
824
Normal
0.6
217
Tumor
0.6
314
Normal
0.6
271
Tumor
0.6
363
Tumor
0.6
148
Normal
0.6
514
Normal
0.6
954
Normal
0.6
557
Tumor
0.6
298
Normal
0.6
132
Normal
0.6
224
Normal
0.6
958
Normal
0.6
818
Normal
0.6
1016
Normal
0.6
572
Normal
0.5
912
Normal
0.5
916
Normal
0.5
161
Tumor
0.5
564
Normal
0.5
172
Normal
0.5
284
Normal
0.5
162
Normal
0.5
444
Normal
0.5
1026
Normal
0.5
1044
Normal
0.5
196
Normal
0.5
142
Normal
0.5
261
Tumor
0.5
664
Normal
0.5
188
Normal
0.5
641
Tumor
0.5
212
Normal
0.5
331
Tumor
0.5
878
Normal
0.5
568
Normal
0.5
864
Normal
0.5
366
Normal
0.5
666
Normal
0.5
884
Normal
0.5
816
Normal
0.5
1045
Tumor
0.5
628
Normal
0.5
328
Normal
0.5
195
Tumor
0.5
982
Normal
0.5
1014
Normal
0.4
882
Normal
0.4
387
Tumor
0.4
185
Tumor
0.4
742
Normal
0.4
786
Normal
0.4
617
Tumor
0.4
744
Normal
0.4
964
Normal
0.4
1041
Tumor
0.4
481
Tumor
0.4
713
Tumor
0.4
968
Normal
0.4
126
Normal
0.4
956
Normal
0.4
698
Normal
0.4
488
Normal
0.4
272
Normal
0.4
984
Normal
0.4
526
Normal
0.4
1022
Normal
0.4
452
Normal
0.4
394
Normal
0.4
558
Normal
0.4
232
Normal
0.4
1032
Normal
0.4
352
Normal
0.3
858
Normal
0.3
356
Normal
0.3
857
Tumor
0.3
978
Normal
0.3
111
Normal
0.3
393
Tumor
0.3
491
Tumor
0.3
1042
Normal
0.3
482
Normal
0.3
218
Normal
0.3
262
Normal
0.3
866
Normal
0.3
494
Normal
0.3
1025
Tumor
0.3
967
Tumor
0.3
136
Normal
0.3
665
Tumor
0.3
411
Tumor
0.3
723
Tumor
0.3
518
Normal
0.3
728
Normal
0.3
464
Normal
0.3
492
Normal
0.3
952
Normal
0.3
874
Normal
0.3
456
Normal
0.3
852
Normal
0.2
915
Tumor
0.2
536
Normal
0.2
146
Normal
0.2
914
Normal
0.2
671
Tumor
0.2
966
Normal
0.2
484
Normal
0.2
478
Normal
0.2
213
Tumor
0.2
963
Tumor
0.2
364
Normal
0.2
145
Tumor
0.2
814
Normal
0.2
466
Normal
0.2
1043
Tumor
0.2
851
Tumor
0.2
376
Normal
0.2
362
Normal
0.2
813
Tumor
0.1
756
Normal
0.1
114
Normal
0.1
414
Normal
0.1
341
Tumor
0.1
395
Tumor
0.1
911
Tumor
0.1
428
Normal
0.1
462
Normal
0.1
138
Normal
0.1
517
Tumor
0.1
267
Tumor
0.1
112
Tumor
0.1
867
Tumor
0.1
385
Tumor
0.1
823
Tumor
0.1
944
Normal
0.1
353
Tumor
0.1
672
Normal
0.1
448
Normal
0.1
416
Normal
0.1
412
Normal
0.1
446
Normal
0.1
313
Tumor
0.1
881
Tumor
0.1
663
Tumor
0.1
1028
Normal
0.1
357
Tumor
0.1
714
Normal
0.1
983
Tumor
0.1
817
Tumor
0.1
975
Tumor
0.0
127
Tumor
0.0
472
Normal
0.0
468
Normal
0.0
141
Tumor
0.0
696
Normal
0.0
955
Tumor
0.0
976
Normal
0.0
697
Tumor
0.0
743
Tumor
0.0
231
Tumor
0.0
917
Tumor
0.0
778
Normal
0.0
424
Normal
0.0
498
Normal
0.0
516
Normal
0.0
465
Tumor
0.0
125
Tumor
0.0
187
Tumor
0.0
135
Tumor
0.0
513
Tumor
0.0
716
Normal
0.0
815
Tumor
0.0
474
Normal
0.0
883
Tumor
-0.1
926
Normal
-0.1
635
Tumor
-0.1
487
Tumor
-0.1
257
Tumor
-0.1
785
Tumor
-0.1
515
Tumor
-0.1
285
Tumor
-0.1
695
Tumor
-0.1
924
Normal
-0.1
913
Tumor
-0.1
434
Normal
-0.1
722
Normal
-0.1
461
Tumor
-0.1
422
Normal
-0.1
124
Normal
-0.1
727
Tumor
-0.1
426
Normal
-0.1
223
Tumor
-0.2
918
Normal
-0.2
436
Normal
-0.2
524
Normal
-0.2
415
Tumor
-0.2
447
Tumor
-0.2
368
Normal
-0.2
873
Tumor
-0.2
283
Tumor
-0.2
741
Tumor
-0.2
647
Tumor
-0.2
738
Normal
-0.2
355
Tumor
-0.2
922
Normal
-0.2
493
Tumor
-0.3
483
Tumor
-0.3
965
Tumor
-0.3
131
Tumor
-0.3
113
Tumor
-0.3
137
Tumor
-0.3
423
Tumor
-0.3
981
Tumor
-0.3
745
Tumor
-0.3
471
Tumor
-0.3
715
Tumor
-0.3
455
Tumor
-0.3
957
Tumor
-0.3
535
Tumor
-0.3
953
Tumor
-0.3
473
Tumor
-0.3
383
Tumor
-0.3
351
Tumor
-0.4
977
Tumor
-0.4
1015
Tumor
-0.4
951
Tumor
-0.4
123
Tumor
-0.4
375
Tumor
-0.4
943
Tumor
-0.4
525
Tumor
-0.4
861
Tumor
-0.4
523
Tumor
-0.4
937
Tumor
-0.4
451
Tumor
-0.4
427
Tumor
-0.4
755
Tumor
-0.5
1031
Tumor
-0.5
147
Tumor
-0.5
925
Tumor
-0.5
171
Tumor
-0.5
467
Tumor
-0.5
361
Tumor
-0.5
661
Tumor
-0.6
1027
Tumor
-0.6
721
Tumor
-0.6
685
Tumor
-0.6
1013
Tumor
-0.6
433
Tumor
-0.6
463
Tumor
-0.6
737
Tumor
-0.7
421
Tumor
-0.7
477
Tumor
-0.7
1021
Tumor
-0.7
923
Tumor
-0.7
865
Tumor
-0.7
425
Tumor
-0.7
497
Tumor
-0.8
211
Tumor
-0.8
724
Normal
-0.9
367
Tumor
-1.0
413
Tumor
-1.0
777
Tumor
-1.1
431
Tumor
-1.1
445
Tumor
-1.2
443
Tumor
-1.4
435
Tumor
-1.5
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.