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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.4
nTPM
HPA Brain:
9.0
nTPM
GTEx:
12.4
nTPM
FANTOM5:
31.9
Scaled Tags Per Million
Pig:
10.0
nTPM
Mouse:
31.1
nTPM
Allen mouse:
2.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA015705
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 7.8
1898
Male, age 80, left hemisphere
9.7
2529
Female, age 94, left hemisphere
8.8
2148
Female, age 91, left hemisphere
8.5
1911
Female, age 85, right hemisphere
7.3
2621
Female, age 67, right hemisphere
7.2
1855
Male, age 76, left hemisphere
5.4
Dentate gyrus nTPM: 8.3
1927
Female, age 91, both hemispheres
9.4
2530
Female, age 94, left hemisphere
9.3
2010
Male, age 76, both hemispheres
8.9
2528
Male, age 74, both hemispheres
7.7
2246
Female, age 85, both hemispheres
7.2
2531
Female, age 67, both hemispheres
7.2
Entorhinal gyrus nTPM: 7.9
2117
Female, age 91, right hemisphere
10.2
2686
Male, age 75, right hemisphere
9.0
1938
Female, age 85, left hemisphere
7.9
2764
Male, age 80, right hemisphere
7.8
1787
Male, age 76, left hemisphere
7.6
2613
Female, age 94, left hemisphere
5.0
Hippocampus, CA1 nTPM: 7.8
2749
Male, age 80, left hemisphere
8.5
1873
Female, age 85, both hemispheres
8.4
2527
Male, age 74, both hemispheres
8.2
2045
Male, age 76, both hemispheres
7.4
2082
Female, age 91, right hemisphere
6.6
Hippocampus, CA2 nTPM: 9.0
1940
Female, age 85, left hemisphere
11.1
1892
Male, age 76, both hemispheres
10.0
2249
Male, age 74, both hemispheres
9.3
2437
Female, age 94, left hemisphere
8.0
1963
Male, age 80, left hemisphere
7.9
2113
Female, age 91, right hemisphere
7.9
Hippocampus, CA3 nTPM: 8.1
1867
Male, age 76, both hemispheres
11.1
1891
Female, age 85, both hemispheres
9.6
2436
Male, age 74, both hemispheres
8.4
2861
Female, age 67, both hemispheres
6.8
2137
Male, age 80, left hemisphere
6.6
2620
Female, age 94, left hemisphere
5.9
Parahippocampal cortex nTPM: 8.9
2018
Male, age 76, both hemispheres
11.7
2532
Female, age 72, left hemisphere
10.3
1933
Female, age 85, both hemispheres
10.1
1850
Male, age 80, both hemispheres
9.4
1990
Female, age 91, right hemisphere
9.4
2250
Female, age 67, right hemisphere
8.8
2693
Female, age 94, both hemispheres
8.4
2245
Female, age 91, both hemispheres
7.9
2692
Male, age 74, both hemispheres
6.9
2622
Female, age 67, right hemisphere
6.0
Perirhinal gyrus nTPM: 8.0
1841
Female, age 85, right hemisphere
8.9
1847
Female, age 91, left hemisphere
8.6
1794
Male, age 80, right hemisphere
7.8
2521
Female, age 94, right hemisphere
7.5
2848
Male, age 76, right hemisphere
7.3
Subiculum nTPM: 8.9
2438
Female, age 94, left hemisphere
11.3
2042
Male, age 76, both hemispheres
9.8
1977
Female, age 85, both hemispheres
8.9
1901
Male, age 80, both hemispheres
8.6
2729
Female, age 91, right hemisphere
7.8
2619
Male, age 74, both hemispheres
7.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 12.4
Samples: 197
Max nTPM: 32.1
Min nTPM: 6.7
Std nTPM: 2.6
Median nTPM: 12.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
32.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
19.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
19.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
18.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
17.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
17.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
17.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
17.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
17.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
17.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
17.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
17.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
16.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
16.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
16.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
16.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
16.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
15.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
15.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
15.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
15.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
15.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
15.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
15.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
15.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
15.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
14.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
14.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
14.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
14.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
14.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
14.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
14.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
14.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
14.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
14.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
14.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
14.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
14.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
14.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
13.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
13.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
13.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
13.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
13.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
13.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
13.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
13.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
13.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
13.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
13.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
13.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
13.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
13.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
13.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
13.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
13.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
13.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
13.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
13.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
13.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
13.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
13.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
13.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
13.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
12.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
12.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
12.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
12.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
12.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
12.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
12.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
12.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
12.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
12.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
12.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
12.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
12.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
12.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
12.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
12.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
12.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
12.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
12.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
12.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
12.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
12.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
12.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
12.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
12.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
12.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
12.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
12.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
12.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
12.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
12.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
12.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
11.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
11.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
11.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
11.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
11.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
11.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
11.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
11.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
11.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
11.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
11.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
11.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
11.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
11.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
11.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
11.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
11.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
11.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
11.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
11.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
11.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
11.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
11.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
11.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
11.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
11.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
11.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
11.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
11.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
11.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
11.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
11.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
11.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
11.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
11.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
11.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
11.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
11.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
11.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
10.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
10.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
10.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
10.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
10.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
10.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
10.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
10.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
10.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
10.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
10.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
10.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
10.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
10.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
10.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
10.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
10.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
10.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
10.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
10.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
10.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
10.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
10.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
10.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
10.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
9.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
9.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
9.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
9.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
9.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
9.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
9.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
9.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
9.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
9.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
9.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
9.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
9.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
9.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
9.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
9.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
9.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
8.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
8.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
8.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
8.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
7.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
6.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 29.1
Samples: 4
Max nTPM: 31.1
Min nTPM: 25.2
Sample A
Male
25.2
Sample B
Male
30.5
Sample C
Female
29.5
Sample D
Female
31.1
Hippocampal formation nTPM: 31.1
Samples: 4
Max nTPM: 35.4
Min nTPM: 29.2
Sample A
Male
35.4
Sample B
Male
29.9
Sample C
Female
29.2
Sample D
Female
30.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.