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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
737.9
nTPM
HPA Brain:
841.9
nTPM
GTEx:
737.9
nTPM
FANTOM5:
465.6
Scaled Tags Per Million
Pig:
1123.7
nTPM
Mouse:
1114.2
nTPM
Allen mouse:
7.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
841.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 802.6
1898
Male, age 80, left hemisphere
965.6
2148
Female, age 91, left hemisphere
827.1
2621
Female, age 67, right hemisphere
821.7
2529
Female, age 94, left hemisphere
801.7
1855
Male, age 76, left hemisphere
704.9
1911
Female, age 85, right hemisphere
694.7
Dentate gyrus nTPM: 705.7
2528
Male, age 74, both hemispheres
910.8
2530
Female, age 94, left hemisphere
760.3
1927
Female, age 91, both hemispheres
731.9
2010
Male, age 76, both hemispheres
713.9
2246
Female, age 85, both hemispheres
706.1
2531
Female, age 67, both hemispheres
411.1
Entorhinal gyrus nTPM: 636.5
2117
Female, age 91, right hemisphere
844.7
1938
Female, age 85, left hemisphere
742.1
2686
Male, age 75, right hemisphere
597.1
2764
Male, age 80, right hemisphere
592.0
1787
Male, age 76, left hemisphere
521.7
2613
Female, age 94, left hemisphere
521.4
Hippocampus, CA1 nTPM: 841.9
2527
Male, age 74, both hemispheres
1106.6
2749
Male, age 80, left hemisphere
1066.2
1873
Female, age 85, both hemispheres
969.9
2082
Female, age 91, right hemisphere
578.0
2045
Male, age 76, both hemispheres
488.6
Hippocampus, CA2 nTPM: 783.9
1963
Male, age 80, left hemisphere
1067.0
2249
Male, age 74, both hemispheres
969.1
1892
Male, age 76, both hemispheres
848.8
2437
Female, age 94, left hemisphere
682.8
2113
Female, age 91, right hemisphere
652.4
1940
Female, age 85, left hemisphere
483.5
Hippocampus, CA3 nTPM: 647.0
2436
Male, age 74, both hemispheres
858.5
2861
Female, age 67, both hemispheres
660.2
1867
Male, age 76, both hemispheres
647.4
1891
Female, age 85, both hemispheres
633.7
2137
Male, age 80, left hemisphere
553.2
2620
Female, age 94, left hemisphere
528.9
Parahippocampal cortex nTPM: 694.4
2622
Female, age 67, right hemisphere
928.5
2692
Male, age 74, both hemispheres
869.2
2250
Female, age 67, right hemisphere
831.4
1933
Female, age 85, both hemispheres
758.1
2245
Female, age 91, both hemispheres
707.7
2693
Female, age 94, both hemispheres
660.8
1990
Female, age 91, right hemisphere
615.9
1850
Male, age 80, both hemispheres
571.6
2532
Female, age 72, left hemisphere
505.7
2018
Male, age 76, both hemispheres
495.0
Perirhinal gyrus nTPM: 610.4
1847
Female, age 91, left hemisphere
775.3
1794
Male, age 80, right hemisphere
660.7
1841
Female, age 85, right hemisphere
640.8
2521
Female, age 94, right hemisphere
550.2
2848
Male, age 76, right hemisphere
425.1
Subiculum nTPM: 659.9
2619
Male, age 74, both hemispheres
919.3
2729
Female, age 91, right hemisphere
819.9
2438
Female, age 94, left hemisphere
643.5
1977
Female, age 85, both hemispheres
603.0
1901
Male, age 80, both hemispheres
509.8
2042
Male, age 76, both hemispheres
464.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
737.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 737.9
Samples: 197
Max nTPM: 1784.1
Min nTPM: 105.4
Std nTPM: 299.9
Median nTPM: 727.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1784.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1596.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1551.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1499.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1435.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1422.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1379.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1332.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1321.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
1274.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1260.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1243.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1241.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1240.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1229.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1194.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1192.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1169.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1144.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1144.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1083.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1080.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1079.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1077.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1072.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1065.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1043.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1039.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1033.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1019.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1009.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
998.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
997.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
992.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
975.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
969.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
964.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
960.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
956.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
946.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
943.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
940.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
939.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
938.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
935.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
933.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
912.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
903.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
894.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
889.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
886.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
885.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
883.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
879.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
878.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
877.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
874.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
871.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
870.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
869.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
866.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
864.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
860.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
859.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
859.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
858.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
853.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
848.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
846.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
840.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
836.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
831.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
829.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
816.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
815.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
812.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
810.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
807.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
805.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
805.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
794.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
788.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
783.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
778.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
774.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
769.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
765.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
760.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
758.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
756.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
752.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
752.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
748.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
741.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
741.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
740.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
736.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
727.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
727.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
721.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
714.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
713.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
710.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
710.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
709.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
706.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
699.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
695.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
693.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
693.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
691.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
686.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
686.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
678.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
674.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
671.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
668.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
667.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
659.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
650.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
641.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
638.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
637.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
636.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
634.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
633.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
631.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
626.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
616.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
613.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
611.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
603.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
599.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
587.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
576.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
576.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
573.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
571.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
565.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
554.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
541.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
540.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
529.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
527.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
527.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
523.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
520.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
519.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
515.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
510.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
507.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
504.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
500.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
493.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
479.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
478.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
477.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
468.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
460.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
453.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
451.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
445.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
438.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
435.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
432.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
423.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
423.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
422.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
419.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
411.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
405.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
397.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
396.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
392.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
374.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
365.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
361.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
359.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
342.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
340.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
339.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
334.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
330.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
327.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
315.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
314.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
307.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
302.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
281.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
276.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
249.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
230.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
210.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
210.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
176.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
161.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
105.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1114.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1114.2
Samples: 4
Max nTPM: 1285.4
Min nTPM: 950.3
Sample A
Male
1128.0
Sample B
Male
950.3
Sample C
Female
1285.4
Sample D
Female
1093.1
Hippocampal formation nTPM: 1014.3
Samples: 4
Max nTPM: 1174.4
Min nTPM: 882.8
Sample A
Male
1174.4
Sample B
Male
882.8
Sample C
Female
898.7
Sample D
Female
1101.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.