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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
High
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1133.1
nTPM
GTEx:
1133.1
nTPM
FANTOM5:
583.4
Scaled Tags Per Million
Pig:
962.0
nTPM
Mouse:
3536.5
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA041912
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic positivity in photoreceptor cells and outer plexiform layer.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1133.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1133.1
Samples: 105
Max nTPM: 2186.2
Min nTPM: 282.2
Std nTPM: 380.5
Median nTPM:
352_1
62 years, male
2186.2
218_1
71 years, female
1985.6
319_1
81 years, male
1962.7
163_1
78 years, male
1741.1
172_1
72 years, female
1673.3
321_1
62 years, female
1671.7
355_1
70 years, female
1658.9
354_1
81 years, female
1655.5
316_1
62 years, male
1640.1
394_1
75 years, female
1611.4
377_1
82 years, female
1601.9
356_1
87 years, female
1550.0
447_1
81 years, male
1540.8
320_1
89 years, female
1540.6
375_1
74 years, female
1540.3
386_1
76 years, male
1521.8
237_1
82 years, male
1510.3
292_1
71 years, male
1489.1
425_1
59 years, female
1487.3
389_1
86 years, female
1485.4
376_1
75 years, female
1475.3
350_1
84 years, female
1463.2
379_1
60 years, male
1461.4
349_1
83 years, male
1457.5
243_1
75 years, male
1457.3
406_1
79 years, male
1432.8
286_1
68 years, female
1431.3
335_1
73 years, female
1428.6
322_1
76 years, male
1423.2
99_1
64 years, male
1418.5
35_1
74 years, female
1415.9
503_1
68 years, male
1408.1
318_1
68 years, male
1403.6
6_1
73 years, female
1402.4
405_1
91 years, male
1352.6
353_1
82 years, female
1336.0
404_1
82 years, female
1318.5
229_1
69 years, female
1307.8
384_1
83 years, male
1304.9
246_1
77 years, male
1295.6
480_1
63 years, male
1295.6
153_1
70 years, female
1291.2
177_1
74 years, male
1264.7
293_1
68 years, female
1264.3
251_1
78 years, male
1263.5
347_1
72 years, male
1257.4
189_1
76 years, male
1245.5
517_1
88 years, male
1224.9
317_1
60 years, male
1181.9
526_1
61 years, male
1160.6
266_1
85 years, male
1121.7
217_1
76 years, male
1119.9
115_1
83 years, male
1114.0
506_1
65 years, male
1098.5
396_1
62 years, male
1079.3
291_1
76 years, male
1076.1
348_1
84 years, male
1062.2
126_1
63 years, male
1054.5
9_1
66 years, female
1053.5
324_1
76 years, male
1044.1
351_1
91 years, male
1043.2
265_1
87 years, male
1039.3
468_1
89 years, male
1018.4
264_1
73 years, female
1014.5
499_1
55 years, female
985.8
42_1
85 years, male
976.0
295_1
61 years, female
973.9
452_1
88 years, female
952.5
17_1
71 years, male
947.6
518_1
75 years, female
939.7
18_1
88 years, male
924.6
173_1
67 years, male
912.1
142_1
61 years, female
880.9
4_1
88 years, female
880.7
81_1
67 years, male
879.2
2_1
77 years, female
878.6
254_1
77 years, female
875.6
145_1
84 years, male
856.0
137_1
83 years, male
845.8
313_1
79 years, female
827.5
120_1
70 years, female
818.8
117_1
61 years, male
811.6
311_1
78 years, male
767.2
415_1
77 years, female
756.0
32_1
67 years, male
753.5
139_1
64 years, female
743.8
315_1
62 years, female
740.2
41_1
94 years, female
734.5
307_1
66 years, female
723.2
162_1
79 years, female
719.5
109_1
81 years, female
704.0
466_1
57 years, female
701.0
288_1
66 years, female
700.0
414_1
84 years, female
699.6
43_1
64 years, female
677.4
495_1
57 years, female
658.8
119_1
70 years, female
657.6
314_1
67 years, male
597.6
308_1
70 years, female
537.6
89_1
63 years, male
518.4
149_1
88 years, male
455.7
413_1
59 years, female
435.6
490_1
67 years, female
421.6
501_1
88 years, male
388.2
491_1
89 years, female
282.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.