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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Medium
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
449.8
nTPM
GTEx:
449.8
nTPM
FANTOM5:
1062.3
Scaled Tags Per Million
Pig:
1242.0
nTPM
Mouse:
2706.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA015783
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic and nuclear positivity in photoreceptor cells and subsets of cells in inner nuclear layer.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Medium
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB022363
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic and nuclear positivity in photoreceptor cells and cells in inner nuclear layer.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Medium
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
449.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 449.8
Samples: 105
Max nTPM: 969.5
Min nTPM: 106.8
Std nTPM: 192.1
Median nTPM:
354_1
81 years, female
969.5
218_1
71 years, female
902.0
319_1
81 years, male
880.1
172_1
72 years, female
866.6
350_1
84 years, female
792.2
243_1
75 years, male
774.7
447_1
81 years, male
769.8
352_1
62 years, male
762.8
237_1
82 years, male
757.8
6_1
73 years, female
741.2
386_1
76 years, male
739.8
163_1
78 years, male
737.0
353_1
82 years, female
721.3
349_1
83 years, male
698.1
376_1
75 years, female
653.3
375_1
74 years, female
649.7
379_1
60 years, male
645.2
347_1
72 years, male
639.8
321_1
62 years, female
637.8
355_1
70 years, female
636.5
356_1
87 years, female
612.6
286_1
68 years, female
610.3
384_1
83 years, male
603.3
335_1
73 years, female
578.5
425_1
59 years, female
578.4
322_1
76 years, male
576.3
177_1
74 years, male
576.1
320_1
89 years, female
576.1
316_1
62 years, male
569.5
389_1
86 years, female
568.6
292_1
71 years, male
567.3
351_1
91 years, male
562.7
318_1
68 years, male
561.9
348_1
84 years, male
548.7
377_1
82 years, female
534.0
394_1
75 years, female
512.7
480_1
63 years, male
506.1
293_1
68 years, female
505.1
405_1
91 years, male
497.8
189_1
76 years, male
496.8
404_1
82 years, female
490.6
35_1
74 years, female
479.3
115_1
83 years, male
474.3
406_1
79 years, male
459.8
452_1
88 years, female
456.6
173_1
67 years, male
449.3
251_1
78 years, male
437.2
153_1
70 years, female
435.0
307_1
66 years, female
433.4
99_1
64 years, male
430.8
503_1
68 years, male
428.2
265_1
87 years, male
420.0
264_1
73 years, female
419.7
311_1
78 years, male
419.0
317_1
60 years, male
416.8
229_1
69 years, female
413.6
291_1
76 years, male
409.4
396_1
62 years, male
406.3
526_1
61 years, male
405.7
117_1
61 years, male
394.8
266_1
85 years, male
393.5
9_1
66 years, female
391.0
518_1
75 years, female
387.4
506_1
65 years, male
385.7
2_1
77 years, female
379.8
517_1
88 years, male
374.0
145_1
84 years, male
372.0
246_1
77 years, male
371.4
254_1
77 years, female
357.3
126_1
63 years, male
343.0
18_1
88 years, male
338.8
468_1
89 years, male
330.2
324_1
76 years, male
327.7
295_1
61 years, female
325.6
4_1
88 years, female
323.5
217_1
76 years, male
317.2
142_1
61 years, female
309.5
499_1
55 years, female
305.3
313_1
79 years, female
304.1
17_1
71 years, male
300.7
137_1
83 years, male
299.3
42_1
85 years, male
290.8
315_1
62 years, female
284.4
43_1
64 years, female
282.6
120_1
70 years, female
277.0
41_1
94 years, female
273.1
32_1
67 years, male
259.2
109_1
81 years, female
248.4
415_1
77 years, female
243.3
495_1
57 years, female
242.8
288_1
66 years, female
239.2
414_1
84 years, female
237.8
119_1
70 years, female
232.7
162_1
79 years, female
226.8
139_1
64 years, female
224.1
314_1
67 years, male
222.6
81_1
67 years, male
218.6
308_1
70 years, female
216.8
490_1
67 years, female
191.2
466_1
57 years, female
187.2
149_1
88 years, male
134.0
89_1
63 years, male
122.5
491_1
89 years, female
119.6
501_1
88 years, male
112.6
413_1
59 years, female
106.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.