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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
28.3
nTPM
HPA Brain:
61.9
nTPM
GTEx:
28.3
nTPM
FANTOM5:
12.1
Scaled Tags Per Million
Pig:
12.4
nTPM
Mouse:
55.7
nTPM
Allen mouse:
6.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 35.3
2219
Male, age 76, both hemispheres
60.4
2586
Male, age 75, left hemisphere
52.4
1833
Male, age 53, unknown
34.8
1827
Male, age 72, unknown
33.9
2828
Female, age 72, unknown
33.2
2666
Male, age 74, left hemisphere
32.5
1870
Female, age 42, unknown
28.7
1830
Male, age 51, unknown
27.6
2411
Female, age 72, unknown
27.1
2019
Male, age 18, unknown
22.1
Dorsal raphe nucleus nTPM: 30.9
2298
Female, age 72, unknown
33.4
2750
Male, age 76, both hemispheres
31.1
2047
Male, age 72, unknown
31.0
1828
Male, age 53, unknown
30.1
2016
Female, age 72, unknown
28.8
Inferior colliculus nTPM: 30.6
1848
Female, age 42, unknown
34.4
1890
Male, age 53, unknown
32.1
2849
Male, age 72, unknown
29.4
2097
Female, age 72, unknown
26.7
Median raphe nucleus nTPM: 31.7
2220
Male, age 76, midline
31.7
Periaquaductal grey, anterior nTPM: 38.3
2502
Female, age 75, unknown
42.7
1795
Male, age 51, unknown
37.6
1947
Male, age 18, unknown
34.7
Periaquaductal grey, dorsal nTPM: 32.4
1840
Male, age 53, unknown
43.1
1831
Male, age 72, unknown
31.9
2850
Male, age 76, both hemispheres
28.7
2464
Female, age 72, unknown
25.8
Periaquaductal grey, lateral nTPM: 28.2
2053
Male, age 18, unknown
31.4
2272
Male, age 74, both hemispheres
29.0
2140
Male, age 76, both hemispheres
24.3
Pretectal area nTPM: 33.6
1816
Male, age 51, unknown
48.9
1944
Female, age 72, unknown
39.5
1815
Male, age 53, unknown
37.0
2007
Male, age 72, unknown
36.2
1817
Female, age 42, unknown
33.7
2825
Male, age 18, unknown
31.9
2407
Male, age 75, both hemispheres
31.4
2667
Female, age 75, unknown
30.9
2316
Male, age 76, right hemisphere
29.0
2224
Female, age 72, unknown
28.0
2273
Male, age 74, both hemispheres
22.7
Red nucleus nTPM: 31.2
2584
Male, age 75, left hemisphere
47.1
1904
Male, age 53, unknown
34.5
2725
Female, age 75, unknown
33.2
2769
Male, age 72, unknown
31.7
1821
Female, age 72, unknown
30.7
2503
Female, age 72, unknown
30.1
2227
Male, age 72, unknown
30.0
2588
Male, age 74, left hemisphere
29.7
1865
Male, age 51, unknown
29.4
1954
Female, age 42, unknown
27.5
2823
Male, age 76, right hemisphere
26.9
2785
Male, age 18, unknown
23.2
Substantia nigra nTPM: 61.9
2699
Male, age 18, unknown
107.6
1851
Male, age 51, unknown
87.8
1916
Female, age 42, unknown
72.7
2665
Male, age 74, both hemispheres
67.8
2409
Female, age 72, unknown
65.2
2241
Male, age 72, unknown
52.7
2583
Male, age 75, right hemisphere
52.5
2590
Female, age 75, unknown
42.5
1889
Female, age 72, unknown
36.3
1941
Male, age 53, unknown
33.9
Superior colliculus nTPM: 34.1
2668
Female, age 75, unknown
40.9
2087
Female, age 72, unknown
39.9
1796
Male, age 53, unknown
39.2
2261
Male, age 18, unknown
36.9
2664
Male, age 75, both hemispheres
36.7
1995
Male, age 72, unknown
34.7
1913
Female, age 42, unknown
30.2
2587
Male, age 74, left hemisphere
28.1
1839
Male, age 51, unknown
27.5
1895
Male, age 76, right hemisphere
27.3
Ventral tegmental area nTPM: 50.3
1915
Female, age 42, unknown
74.4
2223
Female, age 72, unknown
62.7
2410
Female, age 72, unknown
45.7
2218
Male, age 76, both hemispheres
44.6
2021
Male, age 53, unknown
40.0
1942
Male, age 51, unknown
34.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 28.3
Samples: 139
Max nTPM: 286.7
Min nTPM: 5.9
Std nTPM: 29.5
Median nTPM: 20.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
286.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
136.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
121.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
114.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
101.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
71.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
65.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
61.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
58.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
53.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
50.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
48.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
46.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
43.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
42.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
41.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
37.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
36.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
35.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
35.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
34.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
34.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
33.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
33.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
32.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
31.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
29.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
29.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
28.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
28.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
28.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
28.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
27.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
27.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
27.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
26.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
26.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
25.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
25.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
24.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
24.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
24.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
24.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
23.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
23.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
23.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
23.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
23.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
22.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
22.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
22.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
22.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
21.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
21.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
21.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
21.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
21.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
21.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
20.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
20.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
20.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
20.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
20.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
20.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
19.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
19.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
19.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
19.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
19.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
19.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
19.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
19.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
18.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
18.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
18.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
17.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
17.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
17.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
17.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
17.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
16.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
16.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
16.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
16.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
16.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
15.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
15.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
15.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
15.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
14.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
14.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
14.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
14.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
14.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
14.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
14.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
13.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
13.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
13.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
13.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
10.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
10.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
10.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
10.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
9.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 55.7
Samples: 4
Max nTPM: 58.2
Min nTPM: 53.6
Sample A
Male
53.7
Sample B
Male
57.1
Sample C
Female
58.2
Sample D
Female
53.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.