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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
60.7
nTPM
HPA Brain:
185.4
nTPM
GTEx:
60.7
nTPM
FANTOM5:
1075.6
Scaled Tags Per Million
Pig:
206.0
nTPM
Mouse:
325.1
nTPM
Allen mouse:
5.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA020043
Antibody CAB005868
Glial cells
Not detected
Low
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 161.1
2621
Female, age 67, right hemisphere
198.9
1911
Female, age 85, right hemisphere
170.6
2148
Female, age 91, left hemisphere
155.6
1898
Male, age 80, left hemisphere
150.3
2529
Female, age 94, left hemisphere
147.8
1855
Male, age 76, left hemisphere
143.4
Dentate gyrus nTPM: 146.5
2531
Female, age 67, both hemispheres
178.9
2246
Female, age 85, both hemispheres
167.6
1927
Female, age 91, both hemispheres
143.9
2010
Male, age 76, both hemispheres
143.8
2530
Female, age 94, left hemisphere
130.0
2528
Male, age 74, both hemispheres
114.8
Entorhinal gyrus nTPM: 153.4
2686
Male, age 75, right hemisphere
191.3
2613
Female, age 94, left hemisphere
179.6
1938
Female, age 85, left hemisphere
154.5
2117
Female, age 91, right hemisphere
135.4
2764
Male, age 80, right hemisphere
132.8
1787
Male, age 76, left hemisphere
127.0
Hippocampus, CA1 nTPM: 160.2
2749
Male, age 80, left hemisphere
192.7
1873
Female, age 85, both hemispheres
173.0
2045
Male, age 76, both hemispheres
160.5
2527
Male, age 74, both hemispheres
146.7
2082
Female, age 91, right hemisphere
128.0
Hippocampus, CA2 nTPM: 142.8
1892
Male, age 76, both hemispheres
160.8
1940
Female, age 85, left hemisphere
157.4
2437
Female, age 94, left hemisphere
142.8
1963
Male, age 80, left hemisphere
136.3
2113
Female, age 91, right hemisphere
131.0
2249
Male, age 74, both hemispheres
128.2
Hippocampus, CA3 nTPM: 185.4
2620
Female, age 94, left hemisphere
216.8
2436
Male, age 74, both hemispheres
214.6
1867
Male, age 76, both hemispheres
185.2
2137
Male, age 80, left hemisphere
183.1
2861
Female, age 67, both hemispheres
162.3
1891
Female, age 85, both hemispheres
150.3
Parahippocampal cortex nTPM: 167.1
2693
Female, age 94, both hemispheres
207.8
2622
Female, age 67, right hemisphere
205.6
1850
Male, age 80, both hemispheres
180.1
2245
Female, age 91, both hemispheres
168.3
2532
Female, age 72, left hemisphere
167.6
1933
Female, age 85, both hemispheres
162.5
2692
Male, age 74, both hemispheres
157.2
2018
Male, age 76, both hemispheres
153.1
2250
Female, age 67, right hemisphere
141.7
1990
Female, age 91, right hemisphere
126.7
Perirhinal gyrus nTPM: 156.1
1841
Female, age 85, right hemisphere
195.5
2521
Female, age 94, right hemisphere
163.1
1794
Male, age 80, right hemisphere
150.7
1847
Female, age 91, left hemisphere
144.8
2848
Male, age 76, right hemisphere
126.6
Subiculum nTPM: 161.0
2042
Male, age 76, both hemispheres
197.9
2438
Female, age 94, left hemisphere
170.8
1901
Male, age 80, both hemispheres
170.1
1977
Female, age 85, both hemispheres
150.0
2619
Male, age 74, both hemispheres
147.8
2729
Female, age 91, right hemisphere
129.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 60.7
Samples: 197
Max nTPM: 108.8
Min nTPM: 30.3
Std nTPM: 16.3
Median nTPM: 58.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
108.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
104.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
100.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
99.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
97.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
97.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
96.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
95.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
95.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
93.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
93.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
92.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
90.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
88.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
87.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
87.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
87.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
86.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
84.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
84.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
83.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
83.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
83.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
82.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
82.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
81.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
80.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
80.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
79.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
77.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
77.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
76.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
76.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
76.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
75.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
75.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
75.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
75.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
75.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
74.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
72.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
71.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
71.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
71.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
70.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
70.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
69.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
69.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
69.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
69.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
69.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
69.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
69.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
69.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
68.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
68.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
68.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
68.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
68.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
67.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
67.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
67.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
67.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
66.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
66.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
65.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
65.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
65.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
65.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
64.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
64.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
64.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
64.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
63.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
63.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
62.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
62.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
62.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
62.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
62.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
61.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
61.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
61.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
61.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
61.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
60.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
60.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
60.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
60.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
60.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
60.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
60.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
59.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
59.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
59.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
59.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
59.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
59.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
58.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
58.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
58.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
58.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
58.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
58.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
58.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
57.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
57.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
57.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
56.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
56.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
56.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
56.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
56.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
55.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
55.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
55.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
55.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
54.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
54.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
54.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
54.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
53.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
53.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
53.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
53.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
52.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
52.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
52.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
52.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
52.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
52.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
52.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
51.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
51.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
51.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
51.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
51.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
51.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
50.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
50.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
49.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
49.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
49.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
49.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
48.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
47.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
47.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
47.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
47.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
47.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
47.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
47.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
47.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
47.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
46.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
46.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
46.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
46.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
46.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
45.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
45.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
45.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
44.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
44.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
44.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
43.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
43.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
43.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
43.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
43.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
43.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
43.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
42.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
42.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
42.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
41.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
41.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
41.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
41.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
41.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
40.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
40.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
40.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
40.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
40.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
39.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
38.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
36.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
36.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
35.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
35.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
35.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
33.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
33.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
33.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
30.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
325.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 317.5
Samples: 4
Max nTPM: 328.0
Min nTPM: 306.8
Sample A
Male
312.9
Sample B
Male
328.0
Sample C
Female
306.8
Sample D
Female
322.1
Hippocampal formation nTPM: 325.2
Samples: 4
Max nTPM: 348.1
Min nTPM: 297.8
Sample A
Male
306.8
Sample B
Male
347.9
Sample C
Female
348.1
Sample D
Female
297.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.