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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 71.2
1984
Male, age 76, both hemispheres
90.9
2301
Female, age 85, both hemispheres
77.4
2090
Male, age 80, both hemispheres
61.3
2188
Female, age 91, both hemispheres
55.4
Dorsal cochlear nucleus nTPM: 82.0
2058
Male, age 76, both hemispheres
98.0
2802
Male, age 74, right hemisphere
89.1
2370
Male, age 61, both hemispheres
87.3
2187
Female, age 91, both hemispheres
76.4
2378
Male, age 80, both hemispheres
59.3
Dorsal tegmental nucleus nTPM: 79.4
2083
Male, age 80, both hemispheres
91.3
1936
Male, age 76, left hemisphere
83.2
2358
Male, age 61, both hemispheres
76.3
2326
Male, age 74, both hemispheres
66.6
Dorsolateral tegmental area nTPM: 68.4
2141
Male, age 76, both hemispheres
89.9
2654
Male, age 80, both hemispheres
85.1
2751
Female, age 85, both hemispheres
76.4
2360
Male, age 74, both hemispheres
54.6
2337
Male, age 61, both hemispheres
36.0
Kolliker-Fuse nucleus nTPM: 81.3
2163
Male, age 80, both hemispheres
121.2
2793
Female, age 91, left hemisphere
71.4
2315
Male, age 76, right hemisphere
51.1
Lateral lemniscal nuclei nTPM: 113.8
2453
Male, age 74, right hemisphere
142.6
2169
Male, age 76, both hemispheres
139.3
2746
Female, age 85, left hemisphere
104.7
2036
Male, age 80, both hemispheres
91.6
2320
Female, age 91, left hemisphere
90.9
Lateral parabrachial nucleus nTPM: 80.1
2139
Female, age 85, right hemisphere
118.4
2790
Male, age 61, both hemispheres
98.5
2013
Male, age 80, both hemispheres
72.0
2792
Male, age 76, both hemispheres
31.5
Lateral vestibular nucleus nTPM: 93.8
2184
Male, age 76, both hemispheres
115.0
2311
Male, age 80, both hemispheres
72.7
Locus coeruleus nTPM: 140.7
2123
Female, age 91, both hemispheres
178.9
2720
Male, age 74, both hemispheres
164.2
2014
Male, age 55, unknown
138.3
2162
Male, age 80, both hemispheres
137.0
1980
Male, age 76, both hemispheres
128.6
2317
Female, age 72, unknown
126.6
2788
Male, age 74, unknown
111.2
Medial parabrachial nucleus nTPM: 90.2
2156
Male, age 61, both hemispheres
118.4
2786
Male, age 76, both hemispheres
86.0
2463
Female, age 85, right hemisphere
82.7
2170
Female, age 91, both hemispheres
82.5
2854
Male, age 80, both hemispheres
81.3
Medial periolivary nuclei nTPM: 113.1
2171
Female, age 85, both hemispheres
171.3
2063
Male, age 76, both hemispheres
155.1
2791
Male, age 74, right hemisphere
86.8
2458
Female, age 91, both hemispheres
82.1
2081
Male, age 80, both hemispheres
70.3
Motor facial nucleus nTPM: 115.4
2062
Male, age 76, both hemispheres
173.2
2327
Male, age 80, both hemispheres
121.1
2365
Male, age 74, right hemisphere
112.6
2795
Female, age 91, both hemispheres
97.8
2697
Female, age 85, both hemispheres
97.4
2126
Male, age 61, both hemispheres
90.6
Motor trigeminal nucleus nTPM: 93.5
2079
Male, age 80, both hemispheres
104.2
2560
Male, age 74, both hemispheres
101.5
2335
Male, age 61, both hemispheres
98.9
2309
Male, age 76, both hemispheres
85.6
2321
Female, age 91, both hemispheres
77.2
Nuclei of the trapezoid body nTPM: 136.1
2735
Female, age 85, both hemispheres
168.5
1983
Male, age 76, both hemispheres
159.3
2159
Male, age 61, both hemispheres
153.7
2166
Male, age 80, both hemispheres
107.9
2368
Female, age 91, both hemispheres
91.4
Nucleus raphe magnus nTPM: 135.8
2172
Female, age 85, both hemispheres
185.5
2160
Male, age 61, both hemispheres
178.5
2455
Male, age 74, both hemispheres
138.4
2051
Male, age 76, both hemispheres
116.9
2328
Male, age 80, both hemispheres
112.7
2459
Female, age 91, both hemispheres
82.7
Paramedian reticular nucleus nTPM: 105.2
2313
Male, age 61, both hemispheres
127.3
2050
Female, age 85, both hemispheres
127.0
2057
Male, age 80, both hemispheres
109.9
2052
Male, age 76, both hemispheres
56.7
Pedunculopontine tegmental nucleus nTPM: 85.4
1921
Female, age 85, both hemispheres
97.2
2334
Male, age 80, both hemispheres
97.0
2338
Male, age 61, both hemispheres
61.9
Pontine nuclei nTPM: 121.9
2787
Female, age 85, both hemispheres
181.2
1968
Male, age 76, left hemisphere
151.0
2727
Male, age 61, right hemisphere
147.8
1863
Male, age 55, unknown
139.6
2109
Female, age 72, unknown
114.8
2454
Male, age 74, left hemisphere
91.6
2115
Male, age 80, left hemisphere
85.4
2319
Female, age 91, both hemispheres
63.6
Pontine raphe nucleus nTPM: 110.0
2122
Female, age 85, midline
127.8
2853
Male, age 76, midline
92.2
Posteroventral cochlear nucleus nTPM: 68.1
2752
Female, age 85, both hemispheres
120.3
2070
Male, age 76, both hemispheres
84.3
2371
Male, age 61, both hemispheres
74.7
2341
Male, age 80, both hemispheres
36.1
2135
Female, age 91, both hemispheres
25.2
Principal sensory trigeminal nucleus nTPM: 114.8
2158
Male, age 61, both hemispheres
171.2
2008
Male, age 80, left hemisphere
114.9
2324
Male, age 76, both hemispheres
104.6
2367
Female, age 91, left hemisphere
68.4
Reticular pontine nucleus, caudal nTPM: 97.5
2332
Male, age 80, right hemisphere
121.4
2092
Male, age 76, both hemispheres
104.5
2457
Female, age 91, both hemispheres
89.1
2559
Male, age 74, both hemispheres
75.3
Reticular pontine nucleus, oral nTPM: 88.2
2012
Female, age 85, both hemispheres
107.5
2361
Male, age 74, both hemispheres
100.7
2167
Male, age 76, both hemispheres
88.6
1939
Male, age 80, both hemispheres
81.6
2366
Female, age 91, both hemispheres
62.6
Reticulotegmental nucleus nTPM: 102.3
2452
Male, age 74, both hemispheres
118.1
2325
Male, age 76, both hemispheres
112.3
2333
Male, age 80, both hemispheres
90.1
2322
Female, age 91, both hemispheres
88.5
Spinal trigeminal nucleus, oral nTPM: 109.1
2164
Male, age 80, both hemispheres
109.6
2737
Female, age 85, both hemispheres
109.4
1978
Male, age 76, both hemispheres
108.3
Subcoeruleus area nTPM: 99.0
2323
Female, age 91, left hemisphere
127.1
2089
Male, age 76, left hemisphere
112.1
1958
Male, age 80, both hemispheres
99.7
2451
Male, age 74, both hemispheres
95.4
2369
Female, age 85, left hemisphere
60.5
Superior olive nTPM: 102.3
1875
Female, age 85, both hemispheres
116.1
2329
Male, age 80, right hemisphere
106.5
2020
Male, age 76, both hemispheres
97.2
2561
Female, age 91, both hemispheres
96.0
2364
Male, age 74, right hemisphere
95.7
Ventral periolivary nuclei nTPM: 118.5
2130
Female, age 85, both hemispheres
166.8
2165
Male, age 80, both hemispheres
136.9
2794
Female, age 91, left hemisphere
92.5
2023
Male, age 76, both hemispheres
77.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 100.0
2449
Male, age 74, both hemispheres
129.9
1959
Male, age 76, both hemispheres
106.1
2359
Male, age 61, both hemispheres
96.7
2840
Female, age 85, both hemispheres
94.7
2161
Male, age 80, both hemispheres
91.9
2456
Female, age 91, both hemispheres
80.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
170.0
Pig sample
Sample description
nTPM
Pons nTPM: 170.0
Samples: 4
Max nTPM: 234.5
Min nTPM: 125.5
Sample A
Female
234.5
Sample B
Female
125.5
Sample C
Male
152.2
Sample D
Male
167.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.