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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
242.3
nTPM
HPA Brain:
262.6
nTPM
GTEx:
242.3
nTPM
FANTOM5:
117.9
Scaled Tags Per Million
Pig:
267.2
nTPM
Mouse:
244.3
nTPM
Allen mouse:
9.5
Expression energy
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA023548
Glial cells
Not detected
Immunohistochemical staining of human hippocampus shows strong extracellular positivity.
100 ฮผm
Neuronal cells
Not detected
Neuronal projections
High
Synapses
Not detected
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA070733
Glial cells
Not detected
Immunohistochemical staining of human hippocampus shows strong extracellular positivity.
100 ฮผm
Neuronal cells
Not detected
Neuronal projections
High
Synapses
Not detected
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
262.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 248.9
2621
Female, age 67, right hemisphere
308.2
2148
Female, age 91, left hemisphere
276.3
1898
Male, age 80, left hemisphere
272.6
2529
Female, age 94, left hemisphere
230.3
1855
Male, age 76, left hemisphere
212.6
1911
Female, age 85, right hemisphere
193.4
Dentate gyrus nTPM: 252.2
2531
Female, age 67, both hemispheres
332.6
1927
Female, age 91, both hemispheres
294.5
2530
Female, age 94, left hemisphere
280.8
2528
Male, age 74, both hemispheres
213.3
2246
Female, age 85, both hemispheres
199.7
2010
Male, age 76, both hemispheres
192.4
Entorhinal gyrus nTPM: 189.6
2613
Female, age 94, left hemisphere
235.0
2764
Male, age 80, right hemisphere
223.7
1787
Male, age 76, left hemisphere
199.5
1938
Female, age 85, left hemisphere
184.8
2686
Male, age 75, right hemisphere
163.9
2117
Female, age 91, right hemisphere
130.8
Hippocampus, CA1 nTPM: 260.0
2749
Male, age 80, left hemisphere
393.0
2527
Male, age 74, both hemispheres
257.7
1873
Female, age 85, both hemispheres
222.2
2082
Female, age 91, right hemisphere
217.1
2045
Male, age 76, both hemispheres
209.9
Hippocampus, CA2 nTPM: 241.9
1963
Male, age 80, left hemisphere
331.5
1892
Male, age 76, both hemispheres
246.9
2113
Female, age 91, right hemisphere
240.7
2437
Female, age 94, left hemisphere
240.1
1940
Female, age 85, left hemisphere
209.8
2249
Male, age 74, both hemispheres
182.2
Hippocampus, CA3 nTPM: 258.8
2137
Male, age 80, left hemisphere
365.2
2861
Female, age 67, both hemispheres
360.9
2620
Female, age 94, left hemisphere
297.6
1867
Male, age 76, both hemispheres
189.5
2436
Male, age 74, both hemispheres
181.9
1891
Female, age 85, both hemispheres
157.6
Parahippocampal cortex nTPM: 212.0
2245
Female, age 91, both hemispheres
328.2
2250
Female, age 67, right hemisphere
243.1
2622
Female, age 67, right hemisphere
221.3
1850
Male, age 80, both hemispheres
218.0
1990
Female, age 91, right hemisphere
202.5
1933
Female, age 85, both hemispheres
197.3
2693
Female, age 94, both hemispheres
196.0
2532
Female, age 72, left hemisphere
187.7
2018
Male, age 76, both hemispheres
184.8
2692
Male, age 74, both hemispheres
140.6
Perirhinal gyrus nTPM: 262.6
2521
Female, age 94, right hemisphere
314.6
1847
Female, age 91, left hemisphere
304.9
1794
Male, age 80, right hemisphere
281.9
1841
Female, age 85, right hemisphere
223.5
2848
Male, age 76, right hemisphere
188.3
Subiculum nTPM: 171.7
1901
Male, age 80, both hemispheres
191.2
2729
Female, age 91, right hemisphere
191.2
1977
Female, age 85, both hemispheres
184.5
2438
Female, age 94, left hemisphere
165.5
2619
Male, age 74, both hemispheres
162.4
2042
Male, age 76, both hemispheres
135.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
242.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 242.3
Samples: 197
Max nTPM: 918.0
Min nTPM: 18.8
Std nTPM: 129.2
Median nTPM: 245.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
918.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
627.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
587.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
506.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
490.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
486.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
482.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
480.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
474.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
467.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
456.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
451.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
449.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
441.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
436.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
416.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
405.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
405.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
402.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
390.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
388.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
386.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
383.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
368.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
363.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
363.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
363.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
361.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
358.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
353.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
352.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
351.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
349.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
349.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
346.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
342.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
342.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
339.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
337.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
335.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
333.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
330.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
327.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
326.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
324.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
322.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
322.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
322.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
321.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
320.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
319.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
316.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
313.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
312.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
311.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
308.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
306.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
306.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
305.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
305.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
303.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
303.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
302.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
302.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
296.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
294.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
294.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
292.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
287.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
283.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
275.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
273.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
273.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
272.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
272.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
271.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
269.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
268.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
266.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
264.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
261.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
261.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
259.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
259.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
257.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
257.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
257.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
256.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
256.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
255.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
254.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
254.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
253.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
251.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
250.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
248.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
246.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
246.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
245.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
239.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
239.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
238.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
237.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
235.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
234.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
233.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
232.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
232.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
232.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
230.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
229.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
228.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
227.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
225.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
223.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
221.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
219.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
218.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
215.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
213.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
209.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
208.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
207.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
205.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
201.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
201.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
196.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
195.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
194.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
190.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
189.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
187.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
182.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
175.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
165.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
164.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
161.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
160.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
158.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
157.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
155.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
154.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
154.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
152.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
152.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
152.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
150.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
150.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
149.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
145.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
144.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
143.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
139.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
139.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
135.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
135.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
128.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
122.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
121.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
119.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
119.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
119.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
107.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
97.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
94.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
92.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
88.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
87.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
86.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
85.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
85.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
84.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
80.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
80.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
79.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
77.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
77.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
75.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
67.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
67.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
67.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
66.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
64.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
60.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
58.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
52.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
51.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
50.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
50.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
49.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
48.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
47.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
45.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
43.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
39.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
18.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
244.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 244.3
Samples: 4
Max nTPM: 259.5
Min nTPM: 234.2
Sample A
Male
242.2
Sample B
Male
259.5
Sample C
Female
234.2
Sample D
Female
241.1
Hippocampal formation nTPM: 218.3
Samples: 4
Max nTPM: 234.8
Min nTPM: 200.1
Sample A
Male
234.8
Sample B
Male
216.5
Sample C
Female
200.1
Sample D
Female
221.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.