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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
56.0
nTPM
HPA Brain:
79.3
nTPM
GTEx:
56.0
nTPM
FANTOM5:
379.4
Scaled Tags Per Million
Pig:
68.2
nTPM
Mouse:
28.4
nTPM
Allen mouse:
0.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 66.7
2411
Female, age 72, unknown
93.8
1870
Female, age 42, unknown
90.0
2019
Male, age 18, unknown
87.4
1830
Male, age 51, unknown
83.4
1833
Male, age 53, unknown
80.1
2828
Female, age 72, unknown
59.7
2219
Male, age 76, both hemispheres
55.6
1827
Male, age 72, unknown
46.7
2666
Male, age 74, left hemisphere
41.1
2586
Male, age 75, left hemisphere
29.1
Dorsal raphe nucleus nTPM: 58.0
2750
Male, age 76, both hemispheres
89.2
2016
Female, age 72, unknown
58.5
2298
Female, age 72, unknown
54.1
1828
Male, age 53, unknown
51.8
2047
Male, age 72, unknown
36.3
Inferior colliculus nTPM: 47.0
1848
Female, age 42, unknown
51.8
2097
Female, age 72, unknown
50.1
1890
Male, age 53, unknown
46.7
2849
Male, age 72, unknown
39.3
Median raphe nucleus nTPM: 52.1
2220
Male, age 76, midline
52.1
Periaquaductal grey, anterior nTPM: 44.7
1947
Male, age 18, unknown
50.2
2502
Female, age 75, unknown
47.3
1795
Male, age 51, unknown
36.6
Periaquaductal grey, dorsal nTPM: 41.3
2464
Female, age 72, unknown
53.0
1831
Male, age 72, unknown
45.9
2850
Male, age 76, both hemispheres
37.1
1840
Male, age 53, unknown
29.2
Periaquaductal grey, lateral nTPM: 49.7
2272
Male, age 74, both hemispheres
61.8
2053
Male, age 18, unknown
50.1
2140
Male, age 76, both hemispheres
37.4
Pretectal area nTPM: 52.0
2273
Male, age 74, both hemispheres
67.3
1815
Male, age 53, unknown
65.5
2316
Male, age 76, right hemisphere
64.5
1817
Female, age 42, unknown
55.2
2224
Female, age 72, unknown
53.7
2007
Male, age 72, unknown
53.2
2667
Female, age 75, unknown
51.7
2407
Male, age 75, both hemispheres
45.8
2825
Male, age 18, unknown
44.1
1944
Female, age 72, unknown
38.3
1816
Male, age 51, unknown
32.8
Red nucleus nTPM: 79.3
1865
Male, age 51, unknown
103.9
1821
Female, age 72, unknown
101.3
1904
Male, age 53, unknown
96.6
2785
Male, age 18, unknown
88.2
1954
Female, age 42, unknown
88.0
2823
Male, age 76, right hemisphere
84.8
2769
Male, age 72, unknown
84.5
2227
Male, age 72, unknown
83.9
2503
Female, age 72, unknown
78.1
2725
Female, age 75, unknown
57.8
2588
Male, age 74, left hemisphere
44.9
2584
Male, age 75, left hemisphere
39.7
Substantia nigra nTPM: 58.7
2590
Female, age 75, unknown
83.7
2409
Female, age 72, unknown
69.3
1851
Male, age 51, unknown
67.1
2583
Male, age 75, right hemisphere
60.4
2241
Male, age 72, unknown
59.7
1889
Female, age 72, unknown
55.7
1941
Male, age 53, unknown
51.3
1916
Female, age 42, unknown
50.4
2699
Male, age 18, unknown
50.0
2665
Male, age 74, both hemispheres
39.3
Superior colliculus nTPM: 58.1
1913
Female, age 42, unknown
97.3
1995
Male, age 72, unknown
87.9
2587
Male, age 74, left hemisphere
76.6
1895
Male, age 76, right hemisphere
60.1
1839
Male, age 51, unknown
57.6
1796
Male, age 53, unknown
47.9
2668
Female, age 75, unknown
45.5
2087
Female, age 72, unknown
41.6
2261
Male, age 18, unknown
38.3
2664
Male, age 75, both hemispheres
28.7
Ventral tegmental area nTPM: 67.3
2410
Female, age 72, unknown
88.7
2223
Female, age 72, unknown
82.5
2218
Male, age 76, both hemispheres
63.3
2021
Male, age 53, unknown
59.4
1915
Female, age 42, unknown
55.1
1942
Male, age 51, unknown
54.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 56.0
Samples: 139
Max nTPM: 161.1
Min nTPM: 23.0
Std nTPM: 26.4
Median nTPM: 48.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
161.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
159.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
125.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
124.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
123.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
119.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
118.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
118.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
118.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
114.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
99.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
98.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
96.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
89.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
86.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
85.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
83.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
82.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
80.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
80.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
79.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
78.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
75.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
75.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
72.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
71.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
71.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
71.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
70.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
69.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
69.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
69.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
69.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
68.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
68.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
67.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
66.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
65.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
65.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
64.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
63.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
62.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
62.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
62.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
61.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
61.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
59.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
57.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
57.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
56.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
56.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
55.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
55.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
54.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
54.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
53.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
53.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
52.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
52.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
51.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
50.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
49.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
49.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
49.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
49.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
48.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
48.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
48.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
48.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
48.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
47.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
47.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
46.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
46.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
45.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
44.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
43.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
43.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
43.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
42.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
41.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
41.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
41.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
41.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
40.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
40.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
40.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
40.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
40.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
40.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
39.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
39.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
39.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
39.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
39.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
39.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
39.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
39.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
39.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
39.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
38.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
38.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
37.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
36.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
36.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
36.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
36.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
36.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
35.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
35.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
35.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
35.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
35.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
34.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
34.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
33.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
33.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
33.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
32.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
32.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
31.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
31.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
31.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
31.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
30.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
29.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
29.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
26.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
25.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
25.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
23.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 28.4
Samples: 4
Max nTPM: 30.6
Min nTPM: 25.4
Sample A
Male
25.4
Sample B
Male
26.9
Sample C
Female
30.6
Sample D
Female
30.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.