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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
55.2
nTPM
HPA Brain:
166.8
nTPM
GTEx:
55.2
nTPM
FANTOM5:
103.4
Scaled Tags Per Million
Pig:
143.9
nTPM
Mouse:
230.8
nTPM
Allen mouse:
18.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
166.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 81.8
1898
Male, age 80, left hemisphere
155.4
1855
Male, age 76, left hemisphere
91.5
2621
Female, age 67, right hemisphere
85.5
2148
Female, age 91, left hemisphere
80.6
1911
Female, age 85, right hemisphere
46.5
2529
Female, age 94, left hemisphere
31.2
Dentate gyrus nTPM: 91.9
1927
Female, age 91, both hemispheres
140.5
2010
Male, age 76, both hemispheres
96.6
2530
Female, age 94, left hemisphere
96.6
2246
Female, age 85, both hemispheres
76.4
2528
Male, age 74, both hemispheres
75.8
2531
Female, age 67, both hemispheres
65.7
Entorhinal gyrus nTPM: 114.0
2613
Female, age 94, left hemisphere
159.6
1938
Female, age 85, left hemisphere
155.8
2764
Male, age 80, right hemisphere
148.3
1787
Male, age 76, left hemisphere
89.0
2686
Male, age 75, right hemisphere
74.0
2117
Female, age 91, right hemisphere
57.2
Hippocampus, CA1 nTPM: 100.8
2749
Male, age 80, left hemisphere
173.3
1873
Female, age 85, both hemispheres
118.1
2045
Male, age 76, both hemispheres
76.1
2527
Male, age 74, both hemispheres
70.8
2082
Female, age 91, right hemisphere
65.7
Hippocampus, CA2 nTPM: 94.7
1963
Male, age 80, left hemisphere
152.6
1892
Male, age 76, both hemispheres
119.4
1940
Female, age 85, left hemisphere
93.0
2113
Female, age 91, right hemisphere
75.7
2437
Female, age 94, left hemisphere
67.0
2249
Male, age 74, both hemispheres
60.5
Hippocampus, CA3 nTPM: 80.0
2137
Male, age 80, left hemisphere
102.8
2620
Female, age 94, left hemisphere
97.0
1867
Male, age 76, both hemispheres
76.9
2436
Male, age 74, both hemispheres
73.1
2861
Female, age 67, both hemispheres
68.7
1891
Female, age 85, both hemispheres
61.5
Parahippocampal cortex nTPM: 113.3
1850
Male, age 80, both hemispheres
194.5
1990
Female, age 91, right hemisphere
155.3
1933
Female, age 85, both hemispheres
131.6
2693
Female, age 94, both hemispheres
123.0
2245
Female, age 91, both hemispheres
116.0
2532
Female, age 72, left hemisphere
105.8
2622
Female, age 67, right hemisphere
87.9
2250
Female, age 67, right hemisphere
81.2
2018
Male, age 76, both hemispheres
74.1
2692
Male, age 74, both hemispheres
63.9
Perirhinal gyrus nTPM: 166.8
1847
Female, age 91, left hemisphere
256.5
1794
Male, age 80, right hemisphere
178.7
1841
Female, age 85, right hemisphere
156.6
2521
Female, age 94, right hemisphere
140.8
2848
Male, age 76, right hemisphere
101.4
Subiculum nTPM: 61.9
1977
Female, age 85, both hemispheres
102.3
1901
Male, age 80, both hemispheres
74.7
2729
Female, age 91, right hemisphere
54.3
2619
Male, age 74, both hemispheres
53.4
2438
Female, age 94, left hemisphere
45.9
2042
Male, age 76, both hemispheres
40.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 55.2
Samples: 197
Max nTPM: 240.8
Min nTPM: 1.2
Std nTPM: 45.2
Median nTPM: 43.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
240.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
188.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
185.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
178.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
171.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
170.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
163.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
156.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
155.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
155.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
154.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
151.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
147.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
141.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
127.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
126.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
125.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
119.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
119.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
114.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
113.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
113.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
108.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
108.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
107.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
106.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
101.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
99.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
99.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
98.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
96.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
96.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
95.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
95.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
95.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
95.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
94.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
92.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
91.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
91.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
90.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
90.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
87.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
85.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
83.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
83.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
83.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
80.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
79.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
78.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
78.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
77.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
77.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
77.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
76.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
74.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
73.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
73.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
72.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
72.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
72.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
71.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
71.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
71.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
71.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
71.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
68.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
68.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
65.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
63.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
63.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
59.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
59.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
58.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
57.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
56.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
55.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
55.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
54.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
54.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
53.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
53.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
52.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
51.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
50.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
50.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
49.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
49.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
48.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
47.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
47.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
47.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
47.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
47.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
46.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
45.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
45.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
45.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
43.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
43.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
41.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
41.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
39.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
39.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
38.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
37.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
37.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
36.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
35.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
35.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
35.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
35.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
34.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
33.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
33.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
33.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
33.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
33.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
32.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
32.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
31.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
29.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
29.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
29.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
29.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
29.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
28.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
28.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
28.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
26.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
26.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
25.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
24.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
24.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
23.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
23.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
22.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
22.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
22.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
21.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
20.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
20.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
19.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
19.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
19.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
19.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
19.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
19.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
18.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
16.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
16.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
16.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
15.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
15.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
14.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
14.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
14.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
14.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
14.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
14.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
14.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
13.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
13.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
13.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
13.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
13.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
12.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
12.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
11.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
11.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
11.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
11.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
11.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
11.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
11.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
11.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
10.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
9.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
9.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
8.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
8.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
8.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
7.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
6.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
6.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
5.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
5.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
5.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
5.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
4.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
3.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
230.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 219.5
Samples: 4
Max nTPM: 248.9
Min nTPM: 198.1
Sample A
Male
198.1
Sample B
Male
219.6
Sample C
Female
211.2
Sample D
Female
248.9
Hippocampal formation nTPM: 230.8
Samples: 4
Max nTPM: 244.0
Min nTPM: 200.9
Sample A
Male
244.0
Sample B
Male
235.3
Sample C
Female
242.9
Sample D
Female
200.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.