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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.9
nTPM
HPA Brain:
41.5
nTPM
GTEx:
46.9
nTPM
FANTOM5:
12.3
Scaled Tags Per Million
Pig:
8.7
nTPM
Mouse:
16.3
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 40.1
2586
Male, age 75, left hemisphere
60.7
2828
Female, age 72, unknown
48.8
1827
Male, age 72, unknown
45.4
2666
Male, age 74, left hemisphere
39.9
1870
Female, age 42, unknown
39.2
2411
Female, age 72, unknown
37.4
2019
Male, age 18, unknown
36.2
1833
Male, age 53, unknown
33.8
1830
Male, age 51, unknown
31.7
2219
Male, age 76, both hemispheres
27.5
Dorsal raphe nucleus nTPM: 36.7
2016
Female, age 72, unknown
39.2
2298
Female, age 72, unknown
39.2
2047
Male, age 72, unknown
37.9
1828
Male, age 53, unknown
37.4
2750
Male, age 76, both hemispheres
29.9
Inferior colliculus nTPM: 37.5
1848
Female, age 42, unknown
40.4
2849
Male, age 72, unknown
39.7
1890
Male, age 53, unknown
35.6
2097
Female, age 72, unknown
34.2
Median raphe nucleus nTPM: 30.9
2220
Male, age 76, midline
30.9
Periaquaductal grey, anterior nTPM: 39.7
2502
Female, age 75, unknown
41.7
1795
Male, age 51, unknown
41.0
1947
Male, age 18, unknown
36.2
Periaquaductal grey, dorsal nTPM: 38.9
1840
Male, age 53, unknown
41.8
1831
Male, age 72, unknown
41.4
2850
Male, age 76, both hemispheres
38.4
2464
Female, age 72, unknown
34.1
Periaquaductal grey, lateral nTPM: 38.6
2053
Male, age 18, unknown
45.0
2272
Male, age 74, both hemispheres
39.2
2140
Male, age 76, both hemispheres
31.4
Pretectal area nTPM: 41.5
1816
Male, age 51, unknown
51.5
1944
Female, age 72, unknown
47.5
1817
Female, age 42, unknown
45.7
1815
Male, age 53, unknown
44.3
2667
Female, age 75, unknown
44.3
2007
Male, age 72, unknown
41.9
2273
Male, age 74, both hemispheres
39.5
2825
Male, age 18, unknown
38.1
2407
Male, age 75, both hemispheres
36.9
2224
Female, age 72, unknown
34.2
2316
Male, age 76, right hemisphere
32.1
Red nucleus nTPM: 38.2
2725
Female, age 75, unknown
43.4
1821
Female, age 72, unknown
41.6
2588
Male, age 74, left hemisphere
40.2
2503
Female, age 72, unknown
39.5
1954
Female, age 42, unknown
38.6
1865
Male, age 51, unknown
38.4
2785
Male, age 18, unknown
37.2
1904
Male, age 53, unknown
37.0
2227
Male, age 72, unknown
37.0
2769
Male, age 72, unknown
36.7
2584
Male, age 75, left hemisphere
36.4
2823
Male, age 76, right hemisphere
32.2
Substantia nigra nTPM: 35.4
1916
Female, age 42, unknown
44.2
2665
Male, age 74, both hemispheres
40.9
1851
Male, age 51, unknown
36.8
1941
Male, age 53, unknown
36.3
2583
Male, age 75, right hemisphere
36.2
1889
Female, age 72, unknown
36.0
2699
Male, age 18, unknown
34.0
2590
Female, age 75, unknown
32.2
2409
Female, age 72, unknown
31.5
2241
Male, age 72, unknown
26.1
Superior colliculus nTPM: 40.9
2664
Male, age 75, both hemispheres
52.6
2261
Male, age 18, unknown
46.0
1796
Male, age 53, unknown
43.8
1995
Male, age 72, unknown
41.6
2587
Male, age 74, left hemisphere
41.6
2087
Female, age 72, unknown
40.8
1913
Female, age 42, unknown
40.7
1839
Male, age 51, unknown
37.9
2668
Female, age 75, unknown
34.1
1895
Male, age 76, right hemisphere
29.5
Ventral tegmental area nTPM: 35.8
2410
Female, age 72, unknown
41.9
1915
Female, age 42, unknown
39.0
1942
Male, age 51, unknown
34.1
2218
Male, age 76, both hemispheres
33.6
2021
Male, age 53, unknown
33.5
2223
Female, age 72, unknown
32.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 46.9
Samples: 139
Max nTPM: 88.5
Min nTPM: 23.4
Std nTPM: 10.9
Median nTPM: 45.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
88.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
84.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
80.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
72.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
70.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
69.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
68.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
68.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
66.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
65.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
63.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
61.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
60.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
59.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
59.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
59.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
58.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
58.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
57.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
57.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
56.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
56.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
56.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
56.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
55.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
53.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
53.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
53.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
52.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
52.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
52.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
52.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
52.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
52.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
51.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
51.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
51.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
51.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
50.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
50.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
49.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
49.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
49.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
49.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
49.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
49.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
48.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
48.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
48.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
48.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
48.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
48.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
48.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
47.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
47.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
47.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
47.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
47.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
46.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
46.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
46.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
46.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
46.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
46.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
45.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
45.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
45.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
45.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
44.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
44.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
44.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
44.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
44.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
44.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
44.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
44.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
43.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
43.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
43.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
43.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
43.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
43.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
42.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
42.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
42.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
42.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
42.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
41.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
41.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
41.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
40.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
40.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
40.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
40.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
40.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
40.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
40.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
40.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
39.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
39.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
39.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
39.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
39.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
39.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
39.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
39.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
38.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
38.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
38.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
38.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
38.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
38.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
38.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
38.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
38.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
37.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
37.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
37.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
36.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
36.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
35.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
35.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
34.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
33.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
32.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
29.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
28.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
23.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 16.3
Samples: 4
Max nTPM: 18.1
Min nTPM: 15.0
Sample A
Male
18.1
Sample B
Male
15.0
Sample C
Female
15.6
Sample D
Female
16.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.