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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
268.7
nTPM
HPA Brain:
689.0
nTPM
GTEx:
268.7
nTPM
FANTOM5:
654.8
Scaled Tags Per Million
Pig:
400.6
nTPM
Mouse:
622.0
nTPM
Allen mouse:
12.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
689.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 466.3
2411
Female, age 72, unknown
659.8
1830
Male, age 51, unknown
642.8
1833
Male, age 53, unknown
609.9
2019
Male, age 18, unknown
599.9
1870
Female, age 42, unknown
541.3
2828
Female, age 72, unknown
445.7
2219
Male, age 76, both hemispheres
348.9
1827
Male, age 72, unknown
311.6
2666
Male, age 74, left hemisphere
270.6
2586
Male, age 75, left hemisphere
232.2
Dorsal raphe nucleus nTPM: 349.2
2750
Male, age 76, both hemispheres
739.2
2016
Female, age 72, unknown
330.9
1828
Male, age 53, unknown
313.2
2047
Male, age 72, unknown
186.8
2298
Female, age 72, unknown
175.7
Inferior colliculus nTPM: 285.3
2849
Male, age 72, unknown
317.8
1848
Female, age 42, unknown
308.3
1890
Male, age 53, unknown
299.4
2097
Female, age 72, unknown
215.7
Median raphe nucleus nTPM: 312.5
2220
Male, age 76, midline
312.5
Periaquaductal grey, anterior nTPM: 206.9
1947
Male, age 18, unknown
246.1
1795
Male, age 51, unknown
198.3
2502
Female, age 75, unknown
176.3
Periaquaductal grey, dorsal nTPM: 183.2
2464
Female, age 72, unknown
322.6
1831
Male, age 72, unknown
205.0
2850
Male, age 76, both hemispheres
102.7
1840
Male, age 53, unknown
102.3
Periaquaductal grey, lateral nTPM: 246.1
2272
Male, age 74, both hemispheres
379.0
2053
Male, age 18, unknown
237.5
2140
Male, age 76, both hemispheres
122.0
Pretectal area nTPM: 282.2
1815
Male, age 53, unknown
422.6
2316
Male, age 76, right hemisphere
422.6
2407
Male, age 75, both hemispheres
389.0
2273
Male, age 74, both hemispheres
316.9
1817
Female, age 42, unknown
315.9
2007
Male, age 72, unknown
291.2
2825
Male, age 18, unknown
281.2
2224
Female, age 72, unknown
229.4
1944
Female, age 72, unknown
153.0
2667
Female, age 75, unknown
151.5
1816
Male, age 51, unknown
130.8
Red nucleus nTPM: 689.0
2823
Male, age 76, right hemisphere
887.9
1865
Male, age 51, unknown
807.4
1821
Female, age 72, unknown
804.1
1904
Male, age 53, unknown
802.9
2227
Male, age 72, unknown
730.5
2769
Male, age 72, unknown
730.4
2725
Female, age 75, unknown
674.7
2785
Male, age 18, unknown
655.3
1954
Female, age 42, unknown
640.8
2503
Female, age 72, unknown
607.1
2588
Male, age 74, left hemisphere
490.4
2584
Male, age 75, left hemisphere
436.1
Substantia nigra nTPM: 339.2
2590
Female, age 75, unknown
547.3
2583
Male, age 75, right hemisphere
427.9
1851
Male, age 51, unknown
405.2
1889
Female, age 72, unknown
383.5
2409
Female, age 72, unknown
367.4
2699
Male, age 18, unknown
332.0
1941
Male, age 53, unknown
283.6
1916
Female, age 42, unknown
254.6
2241
Male, age 72, unknown
233.9
2665
Male, age 74, both hemispheres
157.1
Superior colliculus nTPM: 378.5
1995
Male, age 72, unknown
586.4
1913
Female, age 42, unknown
552.8
1895
Male, age 76, right hemisphere
530.7
2587
Male, age 74, left hemisphere
427.8
2668
Female, age 75, unknown
409.4
1839
Male, age 51, unknown
404.6
1796
Male, age 53, unknown
298.7
2087
Female, age 72, unknown
213.4
2261
Male, age 18, unknown
183.5
2664
Male, age 75, both hemispheres
177.1
Ventral tegmental area nTPM: 439.4
2223
Female, age 72, unknown
805.7
2410
Female, age 72, unknown
524.4
2218
Male, age 76, both hemispheres
376.4
1942
Male, age 51, unknown
327.7
1915
Female, age 42, unknown
311.4
2021
Male, age 53, unknown
290.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
268.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 268.7
Samples: 139
Max nTPM: 1185.2
Min nTPM: 47.2
Std nTPM: 180.3
Median nTPM: 210.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1185.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
844.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
823.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
779.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
758.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
703.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
695.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
658.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
595.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
588.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
571.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
541.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
527.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
497.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
458.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
455.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
432.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
430.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
416.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
410.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
405.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
401.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
385.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
379.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
378.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
377.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
372.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
363.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
361.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
360.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
353.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
351.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
344.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
342.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
341.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
328.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
323.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
322.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
318.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
314.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
311.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
308.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
304.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
296.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
290.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
286.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
286.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
283.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
280.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
271.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
267.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
266.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
266.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
266.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
262.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
260.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
253.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
253.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
249.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
248.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
248.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
232.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
227.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
217.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
217.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
212.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
211.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
211.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
211.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
210.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
209.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
208.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
208.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
208.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
208.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
207.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
205.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
204.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
204.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
204.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
204.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
196.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
195.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
195.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
190.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
187.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
186.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
184.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
182.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
181.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
178.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
177.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
175.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
173.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
173.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
172.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
170.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
160.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
160.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
156.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
156.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
150.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
149.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
148.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
146.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
141.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
140.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
140.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
137.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
136.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
136.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
131.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
129.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
128.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
125.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
125.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
123.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
120.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
120.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
118.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
118.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
118.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
116.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
114.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
112.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
110.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
104.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
104.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
99.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
95.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
93.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
91.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
86.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
75.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
73.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
69.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
67.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
51.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
47.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
622.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 622.0
Samples: 4
Max nTPM: 684.8
Min nTPM: 524.4
Sample A
Male
603.5
Sample B
Male
524.4
Sample C
Female
675.3
Sample D
Female
684.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.