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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
205.5
nTPM
HPA Brain:
355.5
nTPM
GTEx:
205.5
nTPM
FANTOM5:
159.9
Scaled Tags Per Million
Pig:
164.9
nTPM
Mouse:
353.1
nTPM
Allen mouse:
5.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA012499
Antibody CAB009345
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
355.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 197.8
1911
Female, age 85, right hemisphere
264.8
2529
Female, age 94, left hemisphere
235.0
2621
Female, age 67, right hemisphere
228.9
1898
Male, age 80, left hemisphere
170.4
1855
Male, age 76, left hemisphere
145.4
2148
Female, age 91, left hemisphere
142.6
Dentate gyrus nTPM: 221.0
2530
Female, age 94, left hemisphere
476.9
2528
Male, age 74, both hemispheres
229.0
2010
Male, age 76, both hemispheres
201.1
2246
Female, age 85, both hemispheres
184.4
2531
Female, age 67, both hemispheres
132.4
1927
Female, age 91, both hemispheres
102.2
Entorhinal gyrus nTPM: 239.6
2117
Female, age 91, right hemisphere
461.7
2764
Male, age 80, right hemisphere
323.7
1938
Female, age 85, left hemisphere
179.6
1787
Male, age 76, left hemisphere
166.6
2613
Female, age 94, left hemisphere
162.7
2686
Male, age 75, right hemisphere
143.6
Hippocampus, CA1 nTPM: 155.5
2527
Male, age 74, both hemispheres
203.5
2082
Female, age 91, right hemisphere
195.2
1873
Female, age 85, both hemispheres
193.4
2749
Male, age 80, left hemisphere
141.5
2045
Male, age 76, both hemispheres
43.7
Hippocampus, CA2 nTPM: 224.4
2249
Male, age 74, both hemispheres
330.7
1963
Male, age 80, left hemisphere
265.3
2437
Female, age 94, left hemisphere
252.5
2113
Female, age 91, right hemisphere
201.2
1940
Female, age 85, left hemisphere
197.7
1892
Male, age 76, both hemispheres
99.1
Hippocampus, CA3 nTPM: 129.7
1891
Female, age 85, both hemispheres
314.6
1867
Male, age 76, both hemispheres
162.2
2436
Male, age 74, both hemispheres
152.6
2137
Male, age 80, left hemisphere
80.0
2620
Female, age 94, left hemisphere
40.7
2861
Female, age 67, both hemispheres
28.2
Parahippocampal cortex nTPM: 167.6
2532
Female, age 72, left hemisphere
298.4
2692
Male, age 74, both hemispheres
262.5
1990
Female, age 91, right hemisphere
233.2
1850
Male, age 80, both hemispheres
172.5
2245
Female, age 91, both hemispheres
164.4
1933
Female, age 85, both hemispheres
155.7
2018
Male, age 76, both hemispheres
152.6
2250
Female, age 67, right hemisphere
100.3
2693
Female, age 94, both hemispheres
97.8
2622
Female, age 67, right hemisphere
38.6
Perirhinal gyrus nTPM: 97.7
2521
Female, age 94, right hemisphere
112.9
2848
Male, age 76, right hemisphere
107.1
1794
Male, age 80, right hemisphere
107.0
1847
Female, age 91, left hemisphere
95.2
1841
Female, age 85, right hemisphere
66.3
Subiculum nTPM: 355.5
2042
Male, age 76, both hemispheres
522.8
1901
Male, age 80, both hemispheres
454.6
2438
Female, age 94, left hemisphere
407.0
1977
Female, age 85, both hemispheres
314.4
2619
Male, age 74, both hemispheres
248.0
2729
Female, age 91, right hemisphere
186.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
205.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 205.5
Samples: 197
Max nTPM: 786.9
Min nTPM: 12.8
Std nTPM: 149.1
Median nTPM: 180.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
786.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
719.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
715.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
653.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
626.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
594.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
579.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
566.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
561.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
553.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
506.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
473.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
466.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
464.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
453.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
448.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
446.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
423.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
416.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
409.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
400.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
394.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
390.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
385.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
364.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
363.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
342.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
341.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
341.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
341.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
333.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
333.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
332.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
327.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
324.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
320.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
317.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
307.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
298.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
298.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
292.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
288.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
286.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
285.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
284.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
281.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
280.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
269.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
267.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
267.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
265.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
261.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
259.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
258.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
257.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
250.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
248.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
247.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
247.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
246.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
245.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
242.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
240.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
239.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
237.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
235.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
228.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
228.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
227.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
226.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
225.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
224.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
220.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
219.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
215.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
214.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
214.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
208.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
205.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
204.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
203.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
202.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
202.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
200.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
200.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
199.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
198.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
195.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
194.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
190.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
188.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
187.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
187.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
186.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
185.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
182.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
182.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
180.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
180.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
170.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
163.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
162.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
158.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
157.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
157.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
156.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
150.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
148.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
146.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
145.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
144.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
144.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
143.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
143.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
141.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
139.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
138.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
137.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
137.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
134.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
133.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
127.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
126.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
125.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
125.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
120.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
120.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
119.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
117.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
117.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
116.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
116.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
114.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
114.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
111.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
109.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
109.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
107.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
107.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
107.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
106.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
104.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
104.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
103.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
102.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
102.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
100.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
100.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
99.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
98.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
95.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
92.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
91.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
90.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
88.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
88.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
85.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
84.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
83.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
81.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
79.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
78.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
78.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
78.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
76.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
76.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
75.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
72.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
69.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
67.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
65.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
62.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
62.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
61.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
61.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
60.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
57.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
53.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
52.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
50.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
50.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
49.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
47.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
45.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
44.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
39.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
37.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
34.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
31.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
30.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
30.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
29.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
21.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
16.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
14.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
13.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
12.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
353.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 162.8
Samples: 4
Max nTPM: 254.6
Min nTPM: 62.0
Sample A
Male
254.6
Sample B
Male
154.3
Sample C
Female
180.2
Sample D
Female
62.0
Hippocampal formation nTPM: 353.2
Samples: 4
Max nTPM: 528.4
Min nTPM: 219.7
Sample A
Male
219.7
Sample B
Male
269.8
Sample C
Female
528.4
Sample D
Female
394.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.