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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
450.5
nTPM
Monaco:
260.2
nTPM
Schmiedel:
81.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
450.5
HPA sample
nTPM
gdT-cell nTPM: 337.8
Samples: 6
Max nTPM: 416.9
Min nTPM: 260.0
P10809_1007
260.0
P10809_1022
370.6
P10809_1041
416.9
P10809_1060
321.6
P10809_1077
291.6
P10809_1098
366.3
MAIT T-cell nTPM: 298.7
Samples: 6
Max nTPM: 360.4
Min nTPM: 213.4
P10809_1006
213.4
P10809_1024
342.3
P10809_1043
360.4
P10809_1062
274.8
P10809_1083
293.6
P10809_1097
307.7
Memory CD4 T-cell nTPM: 322.9
Samples: 6
Max nTPM: 410.5
Min nTPM: 240.9
P10809_1014
240.9
P10809_1026
410.5
P10809_1045
341.8
P10809_1064
330.9
P10809_1086
291.2
P10809_1113
322.1
Memory CD8 T-cell nTPM: 298.6
Samples: 5
Max nTPM: 354.2
Min nTPM: 237.5
P10809_1012
237.5
P10809_1027
279.1
P10809_1046
354.2
P10809_1065
322.2
P10809_1111
299.9
Naive CD4 T-cell nTPM: 237.1
Samples: 6
Max nTPM: 312.1
Min nTPM: 154.1
P10809_1015
154.1
P10809_1030
234.7
P10809_1049
312.1
P10809_1068
220.7
P10809_1085
263.3
P10809_1112
237.8
Naive CD8 T-cell nTPM: 271.7
Samples: 6
Max nTPM: 324.9
Min nTPM: 188.1
P10809_1016
188.1
P10809_1031
291.4
P10809_1050
271.6
P10809_1069
324.9
P10809_1087
303.8
P10809_1110
250.5
T-reg nTPM: 450.5
Samples: 6
Max nTPM: 603.7
Min nTPM: 378.8
P10809_1018
387.6
P10809_1037
378.8
P10809_1056
603.7
P10809_1075
387.5
P10809_1094
469.5
P10809_1106
476.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
260.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 168.1
Samples: 4
Max nTPM: 237.6
Min nTPM: 104.1
RHH5202_R3573
190.3
RHH5230_R3602
140.3
RHH5259_R3631
104.1
RHH5288_R3660
237.6
Effector memory CD8 T-cell nTPM: 211.4
Samples: 4
Max nTPM: 256.5
Min nTPM: 157.8
RHH5203_R3574
243.6
RHH5231_R3603
256.5
RHH5260_R3632
157.8
RHH5289_R3661
187.5
MAIT T-cell nTPM: 215.4
Samples: 4
Max nTPM: 299.5
Min nTPM: 121.8
RHH5233_R3605
254.3
RHH5205_R3576
121.8
RHH5262_R3634
185.9
RHH5297_R3663
299.5
Memory CD4 T-cell TFH nTPM: 244.4
Samples: 4
Max nTPM: 317.3
Min nTPM: 171.6
RHH5300_R3666
220.7
RHH5236_R3608
317.3
RHH5265_R3637
171.6
RHH5208_R3579
267.9
Memory CD4 T-cell Th1 nTPM: 192.5
Samples: 4
Max nTPM: 295.5
Min nTPM: 141.5
RHH5210_R3581
188.1
RHH5302_R3668
295.5
RHH5238_R3610
144.7
RHH5267_R3639
141.5
Memory CD4 T-cell Th1/Th17 nTPM: 214.9
Samples: 4
Max nTPM: 346.0
Min nTPM: 80.9
RHH5303_R3669
346.0
RHH5211_R3582
288.0
RHH5239_R3611
80.9
RHH5268_R3640
144.5
Memory CD4 T-cell Th17 nTPM: 156.3
Samples: 4
Max nTPM: 226.1
Min nTPM: 105.9
RHH5304_R3670
176.0
RHH5212_R3583
226.1
RHH5240_R3612
117.0
RHH5269_R3641
105.9
Memory CD4 T-cell Th2 nTPM: 194.5
Samples: 4
Max nTPM: 238.8
Min nTPM: 152.9
RHH5305_R3671
188.5
RHH5213_R3584
197.9
RHH5241_R3613
238.8
RHH5270_R3642
152.9
Naive CD4 T-cell nTPM: 141.5
Samples: 4
Max nTPM: 195.6
Min nTPM: 109.4
RHH5306_R3672
138.3
RHH5214_R3585
195.6
RHH5242_R3614
122.8
RHH5271_R3643
109.4
Naive CD8 T-cell nTPM: 122.7
Samples: 4
Max nTPM: 153.7
Min nTPM: 65.4
RHH5201_R3572
145.3
RHH5229_R3601
65.4
RHH5258_R3630
153.7
RHH5287_R3659
126.3
Non-Vd2 gdTCR nTPM: 245.5
Samples: 4
Max nTPM: 341.2
Min nTPM: 107.8
RHH5235_R3607
107.8
RHH5264_R3636
313.6
RHH5207_R3578
219.5
RHH5299_R3665
341.2
T-reg nTPM: 197.0
Samples: 4
Max nTPM: 261.6
Min nTPM: 125.0
RHH5301_R3667
247.2
RHH5237_R3609
261.6
RHH5266_R3638
125.0
RHH5209_R3580
154.1
Terminal effector memory CD4 T-cell nTPM: 207.0
Samples: 2
Max nTPM: 283.3
Min nTPM: 130.6
RHH5243_R3615
130.6
RHH5272_R3644
283.3
Terminal effector memory CD8 T-cell nTPM: 260.2
Samples: 4
Max nTPM: 332.6
Min nTPM: 154.2
RHH5232_R3604
234.7
RHH5204_R3575
319.4
RHH5261_R3633
154.2
RHH5296_R3662
332.6
Vd2 gdTCR nTPM: 249.4
Samples: 4
Max nTPM: 341.3
Min nTPM: 162.6
RHH5234_R3606
191.6
RHH5206_R3577
341.3
RHH5263_R3635
162.6
RHH5298_R3664
301.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
