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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
290.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 141.8
2301
Female, age 85, both hemispheres
180.3
1984
Male, age 76, both hemispheres
177.0
2188
Female, age 91, both hemispheres
115.7
2090
Male, age 80, both hemispheres
94.3
Dorsal cochlear nucleus nTPM: 124.0
2187
Female, age 91, both hemispheres
146.5
2058
Male, age 76, both hemispheres
145.4
2370
Male, age 61, both hemispheres
135.4
2378
Male, age 80, both hemispheres
96.6
2802
Male, age 74, right hemisphere
96.1
Dorsal tegmental nucleus nTPM: 137.6
2083
Male, age 80, both hemispheres
164.7
2358
Male, age 61, both hemispheres
146.2
1936
Male, age 76, left hemisphere
134.8
2326
Male, age 74, both hemispheres
104.7
Dorsolateral tegmental area nTPM: 135.6
2141
Male, age 76, both hemispheres
198.2
2751
Female, age 85, both hemispheres
167.1
2654
Male, age 80, both hemispheres
147.1
2360
Male, age 74, both hemispheres
108.2
2337
Male, age 61, both hemispheres
57.3
Kolliker-Fuse nucleus nTPM: 174.9
2163
Male, age 80, both hemispheres
259.2
2793
Female, age 91, left hemisphere
180.7
2315
Male, age 76, right hemisphere
84.9
Lateral lemniscal nuclei nTPM: 242.5
2453
Male, age 74, right hemisphere
312.5
2169
Male, age 76, both hemispheres
288.6
2036
Male, age 80, both hemispheres
238.3
2746
Female, age 85, left hemisphere
194.7
2320
Female, age 91, left hemisphere
178.4
Lateral parabrachial nucleus nTPM: 149.5
2139
Female, age 85, right hemisphere
249.0
2790
Male, age 61, both hemispheres
149.4
2013
Male, age 80, both hemispheres
137.4
2792
Male, age 76, both hemispheres
62.2
Lateral vestibular nucleus nTPM: 201.2
2184
Male, age 76, both hemispheres
259.0
2311
Male, age 80, both hemispheres
143.5
Locus coeruleus nTPM: 286.7
2720
Male, age 74, both hemispheres
536.2
2123
Female, age 91, both hemispheres
365.6
2014
Male, age 55, unknown
253.7
2162
Male, age 80, both hemispheres
238.2
1980
Male, age 76, both hemispheres
213.5
2317
Female, age 72, unknown
203.3
2788
Male, age 74, unknown
196.3
Medial parabrachial nucleus nTPM: 173.9
2854
Male, age 80, both hemispheres
211.5
2156
Male, age 61, both hemispheres
198.9
2170
Female, age 91, both hemispheres
164.0
2786
Male, age 76, both hemispheres
160.6
2463
Female, age 85, right hemisphere
134.8
Medial periolivary nuclei nTPM: 208.7
2171
Female, age 85, both hemispheres
339.2
2063
Male, age 76, both hemispheres
263.3
2791
Male, age 74, right hemisphere
189.0
2458
Female, age 91, both hemispheres
139.9
2081
Male, age 80, both hemispheres
112.2
Motor facial nucleus nTPM: 231.3
2365
Male, age 74, right hemisphere
291.8
2062
Male, age 76, both hemispheres
281.8
2327
Male, age 80, both hemispheres
277.0
2697
Female, age 85, both hemispheres
246.7
2126
Male, age 61, both hemispheres
154.2
2795
Female, age 91, both hemispheres
136.5
Motor trigeminal nucleus nTPM: 174.8
2079
Male, age 80, both hemispheres
206.8
2560
Male, age 74, both hemispheres
190.4
2335
Male, age 61, both hemispheres
177.6
2309
Male, age 76, both hemispheres
153.7
2321
Female, age 91, both hemispheres
145.6
Nuclei of the trapezoid body nTPM: 253.1
2159
Male, age 61, both hemispheres
369.1
2735
Female, age 85, both hemispheres
300.7
1983
Male, age 76, both hemispheres
257.6
2166
Male, age 80, both hemispheres
187.4
2368
Female, age 91, both hemispheres
150.7
Nucleus raphe magnus nTPM: 290.6
2172
Female, age 85, both hemispheres
389.5
2160
Male, age 61, both hemispheres
374.1
2455
Male, age 74, both hemispheres
372.8
2328
Male, age 80, both hemispheres
246.0
2051
Male, age 76, both hemispheres
197.4
2459
Female, age 91, both hemispheres
163.7
Paramedian reticular nucleus nTPM: 213.0
2313
Male, age 61, both hemispheres
280.5
2050
Female, age 85, both hemispheres
274.5
2057
Male, age 80, both hemispheres
185.3
2052
Male, age 76, both hemispheres
111.6
Pedunculopontine tegmental nucleus nTPM: 163.6
1921
Female, age 85, both hemispheres
197.3
2334
Male, age 80, both hemispheres
171.7
2338
Male, age 61, both hemispheres
121.8
Pontine nuclei nTPM: 227.4
2787
Female, age 85, both hemispheres
387.3
1863
Male, age 55, unknown
258.1
2727
Male, age 61, right hemisphere
253.6
1968
Male, age 76, left hemisphere
252.8
2454
Male, age 74, left hemisphere
207.7
2109
Female, age 72, unknown
190.9
2115
Male, age 80, left hemisphere
147.7
2319
Female, age 91, both hemispheres
121.0
Pontine raphe nucleus nTPM: 235.4
2122
Female, age 85, midline
266.8
2853
Male, age 76, midline
203.9
Posteroventral cochlear nucleus nTPM: 116.0
2752
Female, age 85, both hemispheres
217.6
2070
Male, age 76, both hemispheres
155.3
2371
Male, age 61, both hemispheres
109.8
2341
Male, age 80, both hemispheres
74.5
2135
Female, age 91, both hemispheres
22.7
Principal sensory trigeminal nucleus nTPM: 234.7
2158
Male, age 61, both hemispheres
313.8
2324
Male, age 76, both hemispheres
237.8
2008
Male, age 80, left hemisphere
237.4
2367
Female, age 91, left hemisphere
149.7
Reticular pontine nucleus, caudal nTPM: 184.7
2332
Male, age 80, right hemisphere
290.8
2092
Male, age 76, both hemispheres
190.7
2457
Female, age 91, both hemispheres
134.7
2559
Male, age 74, both hemispheres
122.7
Reticular pontine nucleus, oral nTPM: 187.0
2012
Female, age 85, both hemispheres
216.6
2361
Male, age 74, both hemispheres
216.2
2167
Male, age 76, both hemispheres
190.3
1939
Male, age 80, both hemispheres
173.2
2366
Female, age 91, both hemispheres
138.7
Reticulotegmental nucleus nTPM: 196.0
2325
Male, age 76, both hemispheres
234.9
2333
Male, age 80, both hemispheres
183.6
2322
Female, age 91, both hemispheres
182.9
2452
Male, age 74, both hemispheres
182.6
Spinal trigeminal nucleus, oral nTPM: 204.4
2164
Male, age 80, both hemispheres
232.7
2737
Female, age 85, both hemispheres
223.6
1978
Male, age 76, both hemispheres
156.9
Subcoeruleus area nTPM: 188.7
2323
Female, age 91, left hemisphere
274.6
1958
Male, age 80, both hemispheres
202.4
2089
Male, age 76, left hemisphere
195.3
2451
Male, age 74, both hemispheres
141.7
2369
Female, age 85, left hemisphere
129.7
Superior olive nTPM: 211.6
1875
Female, age 85, both hemispheres
275.2
2329
Male, age 80, right hemisphere
221.5
2364
Male, age 74, right hemisphere
214.2
2561
Female, age 91, both hemispheres
176.7
2020
Male, age 76, both hemispheres
170.2
Ventral periolivary nuclei nTPM: 240.8
2130
Female, age 85, both hemispheres
317.2
2165
Male, age 80, both hemispheres
287.2
2794
Female, age 91, left hemisphere
211.3
2023
Male, age 76, both hemispheres
147.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 199.4
2449
Male, age 74, both hemispheres
310.2
2840
Female, age 85, both hemispheres
247.8
1959
Male, age 76, both hemispheres
208.4
2161
Male, age 80, both hemispheres
184.0
2359
Male, age 61, both hemispheres
146.9
2456
Female, age 91, both hemispheres
99.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
486.5
Pig sample
Sample description
nTPM
Pons nTPM: 486.5
Samples: 4
Max nTPM: 754.9
Min nTPM: 359.2
Sample A
Female
754.9
Sample B
Female
359.2
Sample C
Male
360.7
Sample D
Male
471.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
