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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
Low
Inner plexiform layer:
Low
Limiting membrane:
Not detected
Nerve fiber layer:
Low
Outer plexiform layer:
Low
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
376.6
nTPM
GTEx:
376.6
nTPM
FANTOM5:
80.6
Scaled Tags Per Million
Pig:
142.3
nTPM
Mouse:
142.5
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA043698
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows cytoplasmic positivity in ganglion cells and cells in inner nuclear layer.
100 ฮผm
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
376.6
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 376.6
Samples: 105
Max nTPM: 597.5
Min nTPM: 130.4
Std nTPM: 94.4
Median nTPM:
376_1
75 years, female
597.5
316_1
62 years, male
587.7
229_1
69 years, female
562.0
153_1
70 years, female
549.1
35_1
74 years, female
534.8
6_1
73 years, female
527.1
172_1
72 years, female
525.9
499_1
55 years, female
514.3
145_1
84 years, male
497.8
126_1
63 years, male
495.5
9_1
66 years, female
492.7
405_1
91 years, male
487.5
495_1
57 years, female
482.6
335_1
73 years, female
477.4
352_1
62 years, male
476.3
319_1
81 years, male
467.8
526_1
61 years, male
465.3
384_1
83 years, male
464.9
311_1
78 years, male
464.4
17_1
71 years, male
463.4
389_1
86 years, female
461.2
415_1
77 years, female
457.6
189_1
76 years, male
456.2
81_1
67 years, male
455.9
386_1
76 years, male
454.0
503_1
68 years, male
449.0
163_1
78 years, male
443.9
286_1
68 years, female
443.3
377_1
82 years, female
431.8
246_1
77 years, male
431.6
292_1
71 years, male
426.5
142_1
61 years, female
422.9
396_1
62 years, male
421.5
217_1
76 years, male
420.4
115_1
83 years, male
419.9
517_1
88 years, male
419.6
218_1
71 years, female
410.2
254_1
77 years, female
406.4
355_1
70 years, female
406.4
293_1
68 years, female
401.3
324_1
76 years, male
401.3
321_1
62 years, female
400.2
350_1
84 years, female
395.9
43_1
64 years, female
395.3
89_1
63 years, male
394.3
18_1
88 years, male
391.2
137_1
83 years, male
390.8
315_1
62 years, female
389.1
347_1
72 years, male
388.0
291_1
76 years, male
386.6
351_1
91 years, male
386.6
353_1
82 years, female
386.3
356_1
87 years, female
384.5
313_1
79 years, female
380.7
265_1
87 years, male
380.0
349_1
83 years, male
374.6
295_1
61 years, female
372.5
149_1
88 years, male
371.2
379_1
60 years, male
368.2
413_1
59 years, female
364.6
266_1
85 years, male
364.1
490_1
67 years, female
362.9
120_1
70 years, female
361.7
264_1
73 years, female
356.0
320_1
89 years, female
355.4
314_1
67 years, male
352.2
4_1
88 years, female
349.9
425_1
59 years, female
348.0
2_1
77 years, female
346.0
307_1
66 years, female
341.8
452_1
88 years, female
338.8
109_1
81 years, female
338.0
506_1
65 years, male
338.0
318_1
68 years, male
337.4
501_1
88 years, male
330.7
404_1
82 years, female
328.3
32_1
67 years, male
325.4
251_1
78 years, male
324.1
414_1
84 years, female
319.2
99_1
64 years, male
315.1
447_1
81 years, male
314.2
322_1
76 years, male
309.6
348_1
84 years, male
305.8
42_1
85 years, male
302.9
177_1
74 years, male
299.5
162_1
79 years, female
297.1
394_1
75 years, female
293.0
173_1
67 years, male
285.2
375_1
74 years, female
278.2
288_1
66 years, female
273.9
468_1
89 years, male
269.1
518_1
75 years, female
268.7
237_1
82 years, male
261.1
117_1
61 years, male
248.9
406_1
79 years, male
236.1
466_1
57 years, female
230.0
139_1
64 years, female
229.2
317_1
60 years, male
228.9
243_1
75 years, male
224.8
119_1
70 years, female
216.6
354_1
81 years, female
208.9
41_1
94 years, female
193.0
308_1
70 years, female
171.9
491_1
89 years, female
158.7
480_1
63 years, male
130.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.