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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
47.8
nTPM
HPA Brain:
75.7
nTPM
GTEx:
47.8
nTPM
FANTOM5:
110.5
Scaled Tags Per Million
Pig:
49.6
nTPM
Mouse:
82.2
nTPM
Allen mouse:
2.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
75.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 70.6
2586
Male, age 75, left hemisphere
81.4
2666
Male, age 74, left hemisphere
78.4
2828
Female, age 72, unknown
76.1
1827
Male, age 72, unknown
74.7
1833
Male, age 53, unknown
71.1
2219
Male, age 76, both hemispheres
66.2
1830
Male, age 51, unknown
66.0
1870
Female, age 42, unknown
65.1
2411
Female, age 72, unknown
64.8
2019
Male, age 18, unknown
62.4
Dorsal raphe nucleus nTPM: 67.8
2298
Female, age 72, unknown
70.6
2750
Male, age 76, both hemispheres
68.6
1828
Male, age 53, unknown
68.2
2016
Female, age 72, unknown
67.4
2047
Male, age 72, unknown
64.0
Inferior colliculus nTPM: 63.3
2849
Male, age 72, unknown
68.2
1890
Male, age 53, unknown
62.8
1848
Female, age 42, unknown
61.1
2097
Female, age 72, unknown
60.9
Median raphe nucleus nTPM: 75.7
2220
Male, age 76, midline
75.7
Periaquaductal grey, anterior nTPM: 69.7
1795
Male, age 51, unknown
71.8
2502
Female, age 75, unknown
69.9
1947
Male, age 18, unknown
67.5
Periaquaductal grey, dorsal nTPM: 69.7
2850
Male, age 76, both hemispheres
82.7
1831
Male, age 72, unknown
68.8
2464
Female, age 72, unknown
65.4
1840
Male, age 53, unknown
62.0
Periaquaductal grey, lateral nTPM: 70.1
2140
Male, age 76, both hemispheres
71.9
2272
Male, age 74, both hemispheres
71.9
2053
Male, age 18, unknown
66.5
Pretectal area nTPM: 72.2
1815
Male, age 53, unknown
84.4
1816
Male, age 51, unknown
83.3
1817
Female, age 42, unknown
81.0
2007
Male, age 72, unknown
73.2
2667
Female, age 75, unknown
73.1
2273
Male, age 74, both hemispheres
69.7
2825
Male, age 18, unknown
69.6
1944
Female, age 72, unknown
68.6
2224
Female, age 72, unknown
68.6
2407
Male, age 75, both hemispheres
61.6
2316
Male, age 76, right hemisphere
61.5
Red nucleus nTPM: 67.2
2584
Male, age 75, left hemisphere
75.7
1904
Male, age 53, unknown
71.2
2725
Female, age 75, unknown
70.6
2823
Male, age 76, right hemisphere
70.5
2785
Male, age 18, unknown
67.6
1954
Female, age 42, unknown
67.5
1821
Female, age 72, unknown
66.9
1865
Male, age 51, unknown
66.2
2227
Male, age 72, unknown
65.9
2769
Male, age 72, unknown
62.9
2503
Female, age 72, unknown
62.7
2588
Male, age 74, left hemisphere
58.3
Substantia nigra nTPM: 70.4
2665
Male, age 74, both hemispheres
82.3
1916
Female, age 42, unknown
76.9
2699
Male, age 18, unknown
75.9
1851
Male, age 51, unknown
73.2
2590
Female, age 75, unknown
68.4
1889
Female, age 72, unknown
68.0
1941
Male, age 53, unknown
66.0
2241
Male, age 72, unknown
66.0
2583
Male, age 75, right hemisphere
65.9
2409
Female, age 72, unknown
61.7
Superior colliculus nTPM: 71.1
2664
Male, age 75, both hemispheres
82.3
2261
Male, age 18, unknown
82.0
1995
Male, age 72, unknown
74.3
1913
Female, age 42, unknown
73.3
2087
Female, age 72, unknown
71.2
1796
Male, age 53, unknown
68.7
2668
Female, age 75, unknown
67.6
2587
Male, age 74, left hemisphere
66.8
1839
Male, age 51, unknown
64.5
1895
Male, age 76, right hemisphere
60.0
Ventral tegmental area nTPM: 67.4
2218
Male, age 76, both hemispheres
75.5
1915
Female, age 42, unknown
67.8
2223
Female, age 72, unknown
66.1
2410
Female, age 72, unknown
66.0
2021
Male, age 53, unknown
65.3
1942
Male, age 51, unknown
64.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 47.8
Samples: 139
Max nTPM: 82.6
Min nTPM: 33.7
Std nTPM: 8.9
Median nTPM: 46.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
82.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
79.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
79.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
70.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
67.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
66.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
65.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
65.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
65.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
64.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
62.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
61.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
60.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
59.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
58.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
57.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
57.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
57.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
55.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
55.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
55.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
54.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
54.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
54.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
54.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
53.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
53.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
53.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
53.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
53.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
52.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
51.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
51.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
51.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
51.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
51.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
50.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
50.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
50.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
50.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
50.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
49.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
49.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
49.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
49.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
49.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
49.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
48.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
48.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
48.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
48.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
48.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
48.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
48.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
47.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
47.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
47.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
47.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
47.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
47.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
47.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
47.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
47.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
47.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
46.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
46.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
46.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
46.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
46.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
45.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
45.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
45.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
44.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
44.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
44.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
44.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
44.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
44.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
44.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
44.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
43.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
43.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
43.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
43.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
43.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
43.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
43.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
43.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
42.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
42.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
42.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
42.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
42.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
41.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
41.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
41.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
41.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
41.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
41.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
41.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
41.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
40.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
40.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
40.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
40.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
40.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
40.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
39.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
39.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
39.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
39.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
39.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
39.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
39.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
38.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
38.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
38.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
38.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
38.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
38.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
37.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
36.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
36.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
35.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
35.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
35.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
34.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
33.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 82.2
Samples: 4
Max nTPM: 86.8
Min nTPM: 78.2
Sample A
Male
83.4
Sample B
Male
78.2
Sample C
Female
80.5
Sample D
Female
86.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.