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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1133.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 388.5
1984
Male, age 76, both hemispheres
484.6
2301
Female, age 85, both hemispheres
443.9
2188
Female, age 91, both hemispheres
352.9
2090
Male, age 80, both hemispheres
272.5
Dorsal cochlear nucleus nTPM: 327.1
2058
Male, age 76, both hemispheres
414.9
2187
Female, age 91, both hemispheres
366.1
2370
Male, age 61, both hemispheres
363.7
2802
Male, age 74, right hemisphere
256.5
2378
Male, age 80, both hemispheres
234.2
Dorsal tegmental nucleus nTPM: 345.1
2083
Male, age 80, both hemispheres
445.8
2358
Male, age 61, both hemispheres
380.0
1936
Male, age 76, left hemisphere
365.7
2326
Male, age 74, both hemispheres
189.1
Dorsolateral tegmental area nTPM: 318.9
2141
Male, age 76, both hemispheres
494.3
2751
Female, age 85, both hemispheres
403.8
2654
Male, age 80, both hemispheres
383.3
2360
Male, age 74, both hemispheres
212.8
2337
Male, age 61, both hemispheres
100.4
Kolliker-Fuse nucleus nTPM: 440.3
2793
Female, age 91, left hemisphere
551.6
2163
Male, age 80, both hemispheres
526.4
2315
Male, age 76, right hemisphere
242.8
Lateral lemniscal nuclei nTPM: 914.9
2453
Male, age 74, right hemisphere
1251.8
2169
Male, age 76, both hemispheres
1026.6
2036
Male, age 80, both hemispheres
904.5
2746
Female, age 85, left hemisphere
820.8
2320
Female, age 91, left hemisphere
571.0
Lateral parabrachial nucleus nTPM: 522.2
2139
Female, age 85, right hemisphere
978.5
2013
Male, age 80, both hemispheres
497.8
2790
Male, age 61, both hemispheres
467.2
2792
Male, age 76, both hemispheres
145.4
Lateral vestibular nucleus nTPM: 437.4
2184
Male, age 76, both hemispheres
532.8
2311
Male, age 80, both hemispheres
342.1
Locus coeruleus nTPM: 539.2
2123
Female, age 91, both hemispheres
905.2
2720
Male, age 74, both hemispheres
724.5
2162
Male, age 80, both hemispheres
468.5
2014
Male, age 55, unknown
445.1
2317
Female, age 72, unknown
440.7
1980
Male, age 76, both hemispheres
414.3
2788
Male, age 74, unknown
375.8
Medial parabrachial nucleus nTPM: 459.9
2854
Male, age 80, both hemispheres
612.8
2156
Male, age 61, both hemispheres
502.8
2170
Female, age 91, both hemispheres
417.8
2786
Male, age 76, both hemispheres
402.5
2463
Female, age 85, right hemisphere
363.5
Medial periolivary nuclei nTPM: 784.3
2171
Female, age 85, both hemispheres
1332.2
2063
Male, age 76, both hemispheres
996.1
2791
Male, age 74, right hemisphere
719.3
2458
Female, age 91, both hemispheres
476.3
2081
Male, age 80, both hemispheres
397.7
Motor facial nucleus nTPM: 809.7
2062
Male, age 76, both hemispheres
1115.9
2365
Male, age 74, right hemisphere
1077.9
2327
Male, age 80, both hemispheres
824.2
2697
Female, age 85, both hemispheres
768.3
2795
Female, age 91, both hemispheres
578.1
2126
Male, age 61, both hemispheres
493.8
Motor trigeminal nucleus nTPM: 555.5
2079
Male, age 80, both hemispheres
797.5
2560
Male, age 74, both hemispheres
721.9
2335
Male, age 61, both hemispheres
476.1
2321
Female, age 91, both hemispheres
401.6
2309
Male, age 76, both hemispheres
380.2
Nuclei of the trapezoid body nTPM: 986.4
2159
Male, age 61, both hemispheres
1498.5
2735
Female, age 85, both hemispheres
1266.3
1983
Male, age 76, both hemispheres
971.4
2166
Male, age 80, both hemispheres
643.5
2368
Female, age 91, both hemispheres
552.4
Nucleus raphe magnus nTPM: 1133.9
2160
Male, age 61, both hemispheres
1739.8
2172
Female, age 85, both hemispheres
1502.6
2455
Male, age 74, both hemispheres
1497.1
2328
Male, age 80, both hemispheres
766.7
2051
Male, age 76, both hemispheres
706.7
2459
Female, age 91, both hemispheres
590.6
Paramedian reticular nucleus nTPM: 565.4
2050
Female, age 85, both hemispheres
907.2
2313
Male, age 61, both hemispheres
580.5
2057
Male, age 80, both hemispheres
534.4
2052
Male, age 76, both hemispheres
239.5
Pedunculopontine tegmental nucleus nTPM: 404.9
1921
Female, age 85, both hemispheres
496.7
2338
Male, age 61, both hemispheres
360.2
2334
Male, age 80, both hemispheres
357.7
Pontine nuclei nTPM: 907.3
2787
Female, age 85, both hemispheres
1632.5
2727
Male, age 61, right hemisphere
1362.6
1863
Male, age 55, unknown
920.8
1968
Male, age 76, left hemisphere
903.4
2109
Female, age 72, unknown
821.0
2454
Male, age 74, left hemisphere
695.2
2115
Male, age 80, left hemisphere
515.5
2319
Female, age 91, both hemispheres
407.2
Pontine raphe nucleus nTPM: 721.3
2122
Female, age 85, midline
1004.0
2853
Male, age 76, midline
438.6
Posteroventral cochlear nucleus nTPM: 327.5
2752
Female, age 85, both hemispheres
706.4
2070
Male, age 76, both hemispheres
400.3
2371
Male, age 61, both hemispheres
319.4
2341
Male, age 80, both hemispheres
197.9
2135
Female, age 91, both hemispheres
13.7
Principal sensory trigeminal nucleus nTPM: 833.0
2158
Male, age 61, both hemispheres
1494.4
2008
Male, age 80, left hemisphere
907.3
2367
Female, age 91, left hemisphere
481.7
2324
Male, age 76, both hemispheres
448.7
Reticular pontine nucleus, caudal nTPM: 569.5
2332
Male, age 80, right hemisphere
937.2
2092
Male, age 76, both hemispheres
665.9
2457
Female, age 91, both hemispheres
433.4
2559
Male, age 74, both hemispheres
241.4
Reticular pontine nucleus, oral nTPM: 596.1
2361
Male, age 74, both hemispheres
950.0
2012
Female, age 85, both hemispheres
796.4
1939
Male, age 80, both hemispheres
420.1
2366
Female, age 91, both hemispheres
415.3
2167
Male, age 76, both hemispheres
398.7
Reticulotegmental nucleus nTPM: 516.8
2325
Male, age 76, both hemispheres
667.8
2452
Male, age 74, both hemispheres
514.9
2333
Male, age 80, both hemispheres
493.4
2322
Female, age 91, both hemispheres
391.1
Spinal trigeminal nucleus, oral nTPM: 473.3
2737
Female, age 85, both hemispheres
593.0
2164
Male, age 80, both hemispheres
476.9
1978
Male, age 76, both hemispheres
349.9
Subcoeruleus area nTPM: 527.2
2089
Male, age 76, left hemisphere
755.5
2323
Female, age 91, left hemisphere
668.4
1958
Male, age 80, both hemispheres
640.0
2369
Female, age 85, left hemisphere
292.1
2451
Male, age 74, both hemispheres
280.0
Superior olive nTPM: 773.1
1875
Female, age 85, both hemispheres
1101.3
2364
Male, age 74, right hemisphere
827.4
2329
Male, age 80, right hemisphere
689.9
2020
Male, age 76, both hemispheres
623.9
2561
Female, age 91, both hemispheres
623.1
Ventral periolivary nuclei nTPM: 858.2
2130
Female, age 85, both hemispheres
1163.7
2165
Male, age 80, both hemispheres
1004.6
2794
Female, age 91, left hemisphere
754.3
2023
Male, age 76, both hemispheres
510.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 677.0
2449
Male, age 74, both hemispheres
1303.2
1959
Male, age 76, both hemispheres
734.5
2840
Female, age 85, both hemispheres
728.6
2161
Male, age 80, both hemispheres
614.3
2456
Female, age 91, both hemispheres
375.5
2359
Male, age 61, both hemispheres
305.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
697.4
Pig sample
Sample description
nTPM
Pons nTPM: 697.4
Samples: 4
Max nTPM: 1039.0
Min nTPM: 507.6
Sample A
Female
1039.0
Sample B
Female
563.8
Sample C
Male
507.6
Sample D
Male
679.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.