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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
386.1
Sample id
Sample description
nTPM
Amygdala nTPM: 318.7
2814
Male, age 76, right hemisphere
635.8
1987
Female, age 91, left hemisphere
386.8
2517
Female, age 94, left hemisphere
274.2
2695
Female, age 67, right hemisphere
152.6
2514
Male, age 75, right hemisphere
144.0
Basal amygdala nTPM: 363.4
2243
Female, age 91, right hemisphere
547.5
2685
Female, age 94, left hemisphere
447.4
1955
Male, age 76, both hemispheres
435.4
2110
Male, age 80, left hemisphere
415.7
2609
Male, age 75, right hemisphere
170.1
2827
Female, age 67, right hemisphere
164.5
Central amygdala nTPM: 386.1
1905
Male, age 76, both hemispheres
600.9
2239
Male, age 80, left hemisphere
403.5
2701
Female, age 91, right hemisphere
402.5
2826
Female, age 94, left hemisphere
333.3
2515
Male, age 75, right hemisphere
190.3
Corticomedial amygdala nTPM: 374.9
2242
Female, age 91, right hemisphere
476.2
2429
Female, age 94, left hemisphere
443.9
2240
Male, age 76, both hemispheres
432.4
2829
Male, age 80, left hemisphere
419.8
2535
Female, age 67, right hemisphere
315.9
2428
Male, age 75, right hemisphere
161.0
Lateral amygdala nTPM: 308.4
1883
Male, age 76, both hemispheres
581.7
2534
Female, age 94, left hemisphere
467.0
2255
Female, age 91, right hemisphere
370.6
2256
Male, age 80, left hemisphere
209.7
2516
Male, age 75, right hemisphere
125.0
2830
Female, age 67, right hemisphere
96.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
131.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 131.3
Samples: 152
Max nTPM: 424.8
Min nTPM: 2.8
Std nTPM: 80.2
Median nTPM: 117.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
424.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
411.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
344.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
325.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
318.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
297.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
297.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
291.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
264.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
251.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
250.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
250.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
243.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
242.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
232.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
231.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
230.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
222.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
221.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
221.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
219.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
219.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
218.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
208.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
208.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
203.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
201.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
201.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
201.4
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
200.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
196.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
191.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
189.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
186.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
185.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
184.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
182.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
178.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
178.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
175.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
175.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
171.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
170.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
169.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
168.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
167.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
167.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
159.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
158.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
157.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
157.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
155.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
152.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
146.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
145.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
145.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
144.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
144.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
143.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
143.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
143.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
141.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
137.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
137.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
134.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
133.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
133.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
129.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
126.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
121.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
121.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
120.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
119.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
119.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
118.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
117.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
117.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
117.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
116.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
112.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
112.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
109.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
109.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
109.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
108.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
107.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
106.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
106.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
105.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
103.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
103.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
102.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
97.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
97.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
96.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
96.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
96.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
95.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
92.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
91.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
91.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
88.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
87.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
84.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
82.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
81.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
81.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
81.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
79.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
75.4
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
74.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
74.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
71.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
70.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
68.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
65.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
64.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
64.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
63.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
62.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
62.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
61.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
61.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
61.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
60.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
59.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
58.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
58.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
58.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
57.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
49.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
47.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
46.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
46.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
43.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
40.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
39.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
34.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
33.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
33.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
28.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
28.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
27.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
26.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
25.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
21.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
15.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
13.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
8.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
2.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
902.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 902.6
Samples: 4
Max nTPM: 1016.6
Min nTPM: 779.8
Sample A
Male
1016.6
Sample B
Male
779.8
Sample C
Female
926.3
Sample D
Female
887.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.