We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
211.4
nTPM
GTEx:
211.4
nTPM
FANTOM5:
425.1
Scaled Tags Per Million
Pig:
747.9
nTPM
Mouse:
850.0
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA036762
Photoreceptor cells
High
Immunohistochemical staining of human retina shows strong nuclear positivity in photoreceptor cells.
100 ฮผm
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA036763
Photoreceptor cells
High
Immunohistochemical staining of human retina shows strong nuclear positivity in photoreceptor cells.
100 ฮผm
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Low
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
211.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 211.4
Samples: 105
Max nTPM: 379.8
Min nTPM: 99.9
Std nTPM: 57.5
Median nTPM:
237_1
82 years, male
379.8
375_1
74 years, female
350.5
35_1
74 years, female
346.0
316_1
62 years, male
341.4
218_1
71 years, female
321.9
447_1
81 years, male
321.3
379_1
60 years, male
321.0
386_1
76 years, male
316.2
319_1
81 years, male
312.2
286_1
68 years, female
304.8
217_1
76 years, male
289.6
354_1
81 years, female
288.3
396_1
62 years, male
287.4
6_1
73 years, female
283.9
376_1
75 years, female
280.8
163_1
78 years, male
276.6
243_1
75 years, male
273.1
229_1
69 years, female
264.6
355_1
70 years, female
264.5
518_1
75 years, female
263.4
172_1
72 years, female
258.6
322_1
76 years, male
258.1
265_1
87 years, male
251.6
503_1
68 years, male
248.2
384_1
83 years, male
243.1
377_1
82 years, female
242.1
353_1
82 years, female
240.9
347_1
72 years, male
239.6
349_1
83 years, male
239.0
348_1
84 years, male
237.7
313_1
79 years, female
235.7
318_1
68 years, male
230.5
246_1
77 years, male
230.4
311_1
78 years, male
230.3
320_1
89 years, female
228.1
335_1
73 years, female
226.4
177_1
74 years, male
223.1
153_1
70 years, female
221.0
405_1
91 years, male
218.1
43_1
64 years, female
216.6
142_1
61 years, female
215.1
352_1
62 years, male
214.4
324_1
76 years, male
214.2
251_1
78 years, male
214.1
350_1
84 years, female
213.7
468_1
89 years, male
211.5
292_1
71 years, male
209.4
351_1
91 years, male
209.0
415_1
77 years, female
208.7
425_1
59 years, female
208.3
526_1
61 years, male
207.6
307_1
66 years, female
207.1
81_1
67 years, male
206.1
356_1
87 years, female
204.3
173_1
67 years, male
202.5
389_1
86 years, female
202.4
264_1
73 years, female
201.8
189_1
76 years, male
200.8
506_1
65 years, male
200.7
17_1
71 years, male
200.0
315_1
62 years, female
198.0
126_1
63 years, male
196.0
162_1
79 years, female
195.1
32_1
67 years, male
194.5
115_1
83 years, male
191.2
414_1
84 years, female
188.7
499_1
55 years, female
184.5
4_1
88 years, female
182.4
99_1
64 years, male
177.6
321_1
62 years, female
176.0
42_1
85 years, male
175.0
145_1
84 years, male
174.9
404_1
82 years, female
174.8
394_1
75 years, female
174.6
406_1
79 years, male
173.3
480_1
63 years, male
172.9
466_1
57 years, female
172.4
109_1
81 years, female
171.3
117_1
61 years, male
170.0
254_1
77 years, female
167.9
120_1
70 years, female
166.1
266_1
85 years, male
165.1
517_1
88 years, male
164.6
490_1
67 years, female
159.9
9_1
66 years, female
157.3
18_1
88 years, male
157.1
293_1
68 years, female
156.8
288_1
66 years, female
156.3
452_1
88 years, female
155.9
314_1
67 years, male
155.1
137_1
83 years, male
154.7
2_1
77 years, female
152.0
291_1
76 years, male
151.5
139_1
64 years, female
150.7
149_1
88 years, male
147.2
413_1
59 years, female
145.2
491_1
89 years, female
141.1
295_1
61 years, female
138.6
501_1
88 years, male
137.7
317_1
60 years, male
135.9
119_1
70 years, female
123.6
495_1
57 years, female
119.7
41_1
94 years, female
119.4
308_1
70 years, female
111.6
89_1
63 years, male
99.9
Show allShow less
RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.