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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15171.1
nTPM
Monaco:
1193.0
nTPM
Schmiedel:
1358.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15171.1
HPA sample
nTPM
gdT-cell nTPM: 9178.1
Samples: 6
Max nTPM: 11643.3
Min nTPM: 6702.7
P10809_1007
9107.1
P10809_1022
9252.9
P10809_1041
11643.3
P10809_1060
6702.7
P10809_1077
9226.8
P10809_1098
9135.5
MAIT T-cell nTPM: 13820.3
Samples: 6
Max nTPM: 16168.1
Min nTPM: 11271.7
P10809_1006
11271.7
P10809_1024
14524.3
P10809_1043
15404.1
P10809_1062
13385.8
P10809_1083
12168.0
P10809_1097
16168.1
Memory CD4 T-cell nTPM: 13513.1
Samples: 6
Max nTPM: 16217.4
Min nTPM: 11147.2
P10809_1014
13353.5
P10809_1026
16217.4
P10809_1045
14680.6
P10809_1064
11371.5
P10809_1086
11147.2
P10809_1113
14308.6
Memory CD8 T-cell nTPM: 11880.4
Samples: 5
Max nTPM: 13842.9
Min nTPM: 10631.6
P10809_1012
11415.1
P10809_1027
11896.9
P10809_1046
13842.9
P10809_1065
10631.6
P10809_1111
11615.4
Naive CD4 T-cell nTPM: 15171.1
Samples: 6
Max nTPM: 18812.4
Min nTPM: 12629.2
P10809_1015
12629.2
P10809_1030
16699.9
P10809_1049
18812.4
P10809_1068
15415.9
P10809_1085
12795.1
P10809_1112
14673.9
Naive CD8 T-cell nTPM: 13839.2
Samples: 6
Max nTPM: 16099.1
Min nTPM: 9564.5
P10809_1016
16099.1
P10809_1031
15763.7
P10809_1050
14047.1
P10809_1069
13280.8
P10809_1087
9564.5
P10809_1110
14280.2
T-reg nTPM: 11407.5
Samples: 6
Max nTPM: 13901.8
Min nTPM: 8497.8
P10809_1018
8497.8
P10809_1037
10834.6
P10809_1056
13901.8
P10809_1075
11269.4
P10809_1094
13623.0
P10809_1106
10318.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1193.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 925.9
Samples: 4
Max nTPM: 1354.8
Min nTPM: 381.1
RHH5202_R3573
381.1
RHH5230_R3602
1309.8
RHH5259_R3631
1354.8
RHH5288_R3660
657.8
Effector memory CD8 T-cell nTPM: 444.3
Samples: 4
Max nTPM: 836.9
Min nTPM: 303.3
RHH5203_R3574
303.3
RHH5231_R3603
310.4
RHH5260_R3632
836.9
RHH5289_R3661
326.5
MAIT T-cell nTPM: 699.7
Samples: 4
Max nTPM: 909.9
Min nTPM: 493.0
RHH5233_R3605
493.0
RHH5205_R3576
909.9
RHH5262_R3634
795.6
RHH5297_R3663
600.4
Memory CD4 T-cell TFH nTPM: 623.4
Samples: 4
Max nTPM: 1067.9
Min nTPM: 384.5
RHH5300_R3666
508.1
RHH5236_R3608
1067.9
RHH5265_R3637
533.0
RHH5208_R3579
384.5
Memory CD4 T-cell Th1 nTPM: 1100.3
Samples: 4
Max nTPM: 2069.2
Min nTPM: 414.1
RHH5210_R3581
414.1
RHH5302_R3668
825.0
RHH5238_R3610
2069.2
RHH5267_R3639
1093.0
Memory CD4 T-cell Th1/Th17 nTPM: 1022.4
Samples: 4
Max nTPM: 1444.3
Min nTPM: 585.9
RHH5303_R3669
772.9
RHH5211_R3582
585.9
RHH5239_R3611
1444.3
RHH5268_R3640
1286.4
Memory CD4 T-cell Th17 nTPM: 909.9
Samples: 4
Max nTPM: 1116.6
Min nTPM: 611.4
RHH5304_R3670
1116.6
RHH5212_R3583
611.4
RHH5240_R3612
1063.7
RHH5269_R3641
847.9
Memory CD4 T-cell Th2 nTPM: 848.0
Samples: 4
Max nTPM: 1169.9
Min nTPM: 716.9
RHH5305_R3671
1169.9
RHH5213_R3584
731.1
RHH5241_R3613
716.9
RHH5270_R3642
773.9
Naive CD4 T-cell nTPM: 1193.0
Samples: 4
Max nTPM: 1500.5
Min nTPM: 740.4
RHH5306_R3672
1400.7
RHH5214_R3585
1500.5
RHH5242_R3614
740.4
RHH5271_R3643
1130.2
Naive CD8 T-cell nTPM: 1070.6
Samples: 4
Max nTPM: 1588.4
Min nTPM: 533.0
RHH5201_R3572
533.0
RHH5229_R3601
1588.4
RHH5258_R3630
721.6
RHH5287_R3659
1439.3
Non-Vd2 gdTCR nTPM: 525.6
Samples: 4
Max nTPM: 860.0
Min nTPM: 352.6
RHH5235_R3607
860.0
RHH5264_R3636
443.4
RHH5207_R3578
352.6
RHH5299_R3665
446.4
T-reg nTPM: 800.8
Samples: 4
Max nTPM: 979.7
Min nTPM: 661.0
RHH5301_R3667
688.3
RHH5237_R3609
661.0
RHH5266_R3638
874.2
RHH5209_R3580
979.7
Terminal effector memory CD4 T-cell nTPM: 574.1
Samples: 2
Max nTPM: 762.6
Min nTPM: 385.5
RHH5243_R3615
762.6
RHH5272_R3644
385.5
Terminal effector memory CD8 T-cell nTPM: 640.6
Samples: 4
Max nTPM: 1056.3
Min nTPM: 289.3
RHH5232_R3604
289.3
RHH5204_R3575
1056.3
RHH5261_R3633
851.3
RHH5296_R3662
365.4
Vd2 gdTCR nTPM: 930.5
Samples: 4
Max nTPM: 1437.4
Min nTPM: 566.7
RHH5234_R3606
566.7
RHH5206_R3577
1437.4
RHH5263_R3635
1003.9
RHH5298_R3664
713.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
