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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1305.4
nTPM
HPA Brain:
539.9
nTPM
GTEx:
1305.4
nTPM
FANTOM5:
27.6
Scaled Tags Per Million
Pig:
669.2
nTPM
Mouse:
348.2
nTPM
Allen mouse:
3.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
539.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 490.2
2586
Male, age 75, left hemisphere
666.7
2828
Female, age 72, unknown
568.4
2666
Male, age 74, left hemisphere
565.2
2411
Female, age 72, unknown
495.2
1830
Male, age 51, unknown
467.3
1870
Female, age 42, unknown
465.9
1827
Male, age 72, unknown
461.5
1833
Male, age 53, unknown
459.6
2019
Male, age 18, unknown
420.8
2219
Male, age 76, both hemispheres
331.9
Dorsal raphe nucleus nTPM: 478.6
2016
Female, age 72, unknown
520.7
2298
Female, age 72, unknown
491.7
2750
Male, age 76, both hemispheres
462.2
2047
Male, age 72, unknown
460.5
1828
Male, age 53, unknown
458.2
Inferior colliculus nTPM: 414.6
1890
Male, age 53, unknown
446.1
2097
Female, age 72, unknown
422.7
1848
Female, age 42, unknown
410.0
2849
Male, age 72, unknown
379.6
Median raphe nucleus nTPM: 406.0
2220
Male, age 76, midline
406.0
Periaquaductal grey, anterior nTPM: 470.5
2502
Female, age 75, unknown
535.2
1795
Male, age 51, unknown
454.3
1947
Male, age 18, unknown
422.1
Periaquaductal grey, dorsal nTPM: 445.4
1831
Male, age 72, unknown
478.6
1840
Male, age 53, unknown
468.2
2464
Female, age 72, unknown
431.3
2850
Male, age 76, both hemispheres
403.6
Periaquaductal grey, lateral nTPM: 455.1
2053
Male, age 18, unknown
553.4
2140
Male, age 76, both hemispheres
433.1
2272
Male, age 74, both hemispheres
378.8
Pretectal area nTPM: 437.4
2316
Male, age 76, right hemisphere
532.6
2407
Male, age 75, both hemispheres
487.5
2825
Male, age 18, unknown
448.4
1817
Female, age 42, unknown
444.4
1815
Male, age 53, unknown
443.1
2007
Male, age 72, unknown
441.7
2224
Female, age 72, unknown
435.9
1944
Female, age 72, unknown
411.3
2273
Male, age 74, both hemispheres
397.8
1816
Male, age 51, unknown
395.9
2667
Female, age 75, unknown
373.1
Red nucleus nTPM: 517.0
2503
Female, age 72, unknown
635.0
2584
Male, age 75, left hemisphere
613.7
1865
Male, age 51, unknown
559.4
2769
Male, age 72, unknown
548.6
2227
Male, age 72, unknown
526.7
1821
Female, age 72, unknown
521.0
1904
Male, age 53, unknown
508.4
2725
Female, age 75, unknown
508.4
2588
Male, age 74, left hemisphere
494.0
2785
Male, age 18, unknown
471.0
1954
Female, age 42, unknown
434.8
2823
Male, age 76, right hemisphere
383.2
Substantia nigra nTPM: 539.9
1851
Male, age 51, unknown
674.5
2699
Male, age 18, unknown
663.6
2665
Male, age 74, both hemispheres
626.6
1916
Female, age 42, unknown
577.8
2590
Female, age 75, unknown
544.2
2583
Male, age 75, right hemisphere
537.3
2409
Female, age 72, unknown
514.1
2241
Male, age 72, unknown
448.4
1941
Male, age 53, unknown
411.6
1889
Female, age 72, unknown
400.4
Superior colliculus nTPM: 497.0
2664
Male, age 75, both hemispheres
599.1
1995
Male, age 72, unknown
573.4
2587
Male, age 74, left hemisphere
569.7
1913
Female, age 42, unknown
556.1
1796
Male, age 53, unknown
504.3
2668
Female, age 75, unknown
493.7
2087
Female, age 72, unknown
448.8
1839
Male, age 51, unknown
441.9
2261
Male, age 18, unknown
429.4
1895
Male, age 76, right hemisphere
353.6
Ventral tegmental area nTPM: 509.2
2021
Male, age 53, unknown
608.1
1915
Female, age 42, unknown
566.0
2410
Female, age 72, unknown
505.7
1942
Male, age 51, unknown
475.0
2223
Female, age 72, unknown
468.9
2218
Male, age 76, both hemispheres
431.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1305.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1305.4
Samples: 139
Max nTPM: 4854.3
Min nTPM: 378.0
Std nTPM: 578.1
Median nTPM: 1234.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4854.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3168.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3090.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2769.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2641.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2603.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2247.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2153.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2143.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2108.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1992.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1907.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1906.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1868.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1864.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1835.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1816.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1796.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1792.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1768.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1765.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1734.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1709.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1708.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1656.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1635.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1616.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1596.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1585.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1562.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1558.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1552.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1541.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1529.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1526.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1526.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1522.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1486.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1486.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1479.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1469.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1452.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1450.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1442.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1431.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1424.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1411.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1401.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1401.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1394.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1384.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1384.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1382.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1382.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1380.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1375.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1363.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1362.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1329.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1321.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1314.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1312.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1302.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1293.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1290.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1254.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1250.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1244.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1244.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1234.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1228.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1215.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1210.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1197.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1178.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1169.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1158.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1152.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1152.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1146.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1127.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1119.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1104.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1101.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1087.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1081.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1069.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1064.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1064.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1047.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1022.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1022.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1018.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1017.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1014.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1004.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
996.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
993.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
977.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
970.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
966.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
966.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
949.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
937.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
915.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
913.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
906.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
903.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
896.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
896.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
885.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
883.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
865.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
859.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
835.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
822.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
796.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
791.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
788.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
786.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
767.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
758.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
748.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
747.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
739.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
735.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
733.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
733.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
700.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
690.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
657.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
645.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
624.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
595.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
588.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
532.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
521.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
479.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
378.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
348.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 348.2
Samples: 4
Max nTPM: 412.3
Min nTPM: 293.6
Sample A
Male
412.3
Sample B
Male
348.0
Sample C
Female
293.6
Sample D
Female
338.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.