We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.2
nTPM
HPA Brain:
21.9
nTPM
GTEx:
14.2
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
Pig:
24.4
nTPM
Mouse:
20.8
nTPM
Allen mouse:
0.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.2
1827
Male, age 72, unknown
16.3
2219
Male, age 76, both hemispheres
16.3
2828
Female, age 72, unknown
16.2
1830
Male, age 51, unknown
15.8
1833
Male, age 53, unknown
15.0
2411
Female, age 72, unknown
14.1
2019
Male, age 18, unknown
13.4
1870
Female, age 42, unknown
13.3
2666
Male, age 74, left hemisphere
11.0
2586
Male, age 75, left hemisphere
10.3
Dorsal raphe nucleus nTPM: 13.5
2047
Male, age 72, unknown
16.7
2016
Female, age 72, unknown
15.6
2298
Female, age 72, unknown
13.6
1828
Male, age 53, unknown
12.0
2750
Male, age 76, both hemispheres
9.6
Inferior colliculus nTPM: 21.9
1890
Male, age 53, unknown
33.8
1848
Female, age 42, unknown
19.9
2849
Male, age 72, unknown
19.3
2097
Female, age 72, unknown
14.5
Median raphe nucleus nTPM: 13.5
2220
Male, age 76, midline
13.5
Periaquaductal grey, anterior nTPM: 12.7
1795
Male, age 51, unknown
15.4
1947
Male, age 18, unknown
14.3
2502
Female, age 75, unknown
8.3
Periaquaductal grey, dorsal nTPM: 15.2
2464
Female, age 72, unknown
17.5
2850
Male, age 76, both hemispheres
17.4
1840
Male, age 53, unknown
15.6
1831
Male, age 72, unknown
10.3
Periaquaductal grey, lateral nTPM: 11.7
2053
Male, age 18, unknown
12.8
2140
Male, age 76, both hemispheres
12.4
2272
Male, age 74, both hemispheres
9.8
Pretectal area nTPM: 14.0
2667
Female, age 75, unknown
18.0
1817
Female, age 42, unknown
15.9
1816
Male, age 51, unknown
15.7
2825
Male, age 18, unknown
14.8
2316
Male, age 76, right hemisphere
14.7
1944
Female, age 72, unknown
14.6
2007
Male, age 72, unknown
14.4
2273
Male, age 74, both hemispheres
12.3
2224
Female, age 72, unknown
11.9
1815
Male, age 53, unknown
11.1
2407
Male, age 75, both hemispheres
11.0
Red nucleus nTPM: 15.4
2503
Female, age 72, unknown
21.3
2227
Male, age 72, unknown
20.5
1821
Female, age 72, unknown
18.9
1954
Female, age 42, unknown
18.1
2823
Male, age 76, right hemisphere
16.4
2769
Male, age 72, unknown
14.9
1904
Male, age 53, unknown
14.5
2588
Male, age 74, left hemisphere
14.3
1865
Male, age 51, unknown
12.8
2725
Female, age 75, unknown
12.4
2785
Male, age 18, unknown
11.2
2584
Male, age 75, left hemisphere
9.1
Substantia nigra nTPM: 10.4
2409
Female, age 72, unknown
16.7
1889
Female, age 72, unknown
15.7
1916
Female, age 42, unknown
11.7
2699
Male, age 18, unknown
10.9
1941
Male, age 53, unknown
9.8
1851
Male, age 51, unknown
8.4
2590
Female, age 75, unknown
8.4
2241
Male, age 72, unknown
8.0
2583
Male, age 75, right hemisphere
7.3
2665
Male, age 74, both hemispheres
6.9
Superior colliculus nTPM: 12.9
1895
Male, age 76, right hemisphere
20.1
2668
Female, age 75, unknown
19.9
2087
Female, age 72, unknown
13.3
1913
Female, age 42, unknown
11.7
1995
Male, age 72, unknown
11.6
1796
Male, age 53, unknown
11.5
2261
Male, age 18, unknown
11.5
1839
Male, age 51, unknown
10.0
2664
Male, age 75, both hemispheres
9.8
2587
Male, age 74, left hemisphere
9.6
Ventral tegmental area nTPM: 12.6
2410
Female, age 72, unknown
14.1
1942
Male, age 51, unknown
13.5
2223
Female, age 72, unknown
12.8
2218
Male, age 76, both hemispheres
12.7
1915
Female, age 42, unknown
11.9
2021
Male, age 53, unknown
10.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14.2
Samples: 139
Max nTPM: 88.6
Min nTPM: 0.6
Std nTPM: 10.2
Median nTPM: 12.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
88.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
37.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
35.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
34.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
33.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
33.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
32.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
32.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
31.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
30.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
29.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
29.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
26.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
26.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
24.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
23.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
23.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
23.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
22.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
19.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
19.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
19.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
18.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
18.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
18.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
18.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
17.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
17.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
17.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
16.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
16.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
16.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
16.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
15.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
15.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
15.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
15.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
15.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
15.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
14.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
14.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
14.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
14.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
13.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
13.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
13.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
13.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
12.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
12.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
12.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
12.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
12.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
11.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
11.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
11.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
10.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
10.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
9.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
9.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
9.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
8.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
8.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
7.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
7.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
6.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
6.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
6.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
6.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
5.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
5.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
5.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
5.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
4.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
4.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.6
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 20.8
Samples: 4
Max nTPM: 25.8
Min nTPM: 13.9
Sample A
Male
25.8
Sample B
Male
13.9
Sample C
Female
23.5
Sample D
Female
19.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.