We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3.0
nTPM
HPA Brain:
151.7
nTPM
GTEx:
3.0
nTPM
FANTOM5:
63.6
Scaled Tags Per Million
Pig:
47.1
nTPM
Mouse:
6.2
nTPM
Allen mouse:
0.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 97.3
2828
Female, age 72, unknown
127.1
1827
Male, age 72, unknown
120.6
2586
Male, age 75, left hemisphere
114.9
2666
Male, age 74, left hemisphere
100.9
1833
Male, age 53, unknown
97.0
1830
Male, age 51, unknown
94.9
1870
Female, age 42, unknown
89.2
2219
Male, age 76, both hemispheres
82.4
2019
Male, age 18, unknown
74.5
2411
Female, age 72, unknown
71.0
Dorsal raphe nucleus nTPM: 112.7
2016
Female, age 72, unknown
133.4
2298
Female, age 72, unknown
124.3
2047
Male, age 72, unknown
107.3
1828
Male, age 53, unknown
100.2
2750
Male, age 76, both hemispheres
98.2
Inferior colliculus nTPM: 108.0
2849
Male, age 72, unknown
120.8
1848
Female, age 42, unknown
116.5
1890
Male, age 53, unknown
109.1
2097
Female, age 72, unknown
85.7
Median raphe nucleus nTPM: 96.3
2220
Male, age 76, midline
96.3
Periaquaductal grey, anterior nTPM: 145.3
1947
Male, age 18, unknown
164.8
1795
Male, age 51, unknown
161.4
2502
Female, age 75, unknown
109.9
Periaquaductal grey, dorsal nTPM: 130.0
2850
Male, age 76, both hemispheres
174.9
1840
Male, age 53, unknown
121.6
1831
Male, age 72, unknown
114.2
2464
Female, age 72, unknown
109.3
Periaquaductal grey, lateral nTPM: 151.7
2140
Male, age 76, both hemispheres
171.4
2272
Male, age 74, both hemispheres
147.4
2053
Male, age 18, unknown
136.4
Pretectal area nTPM: 111.0
2273
Male, age 74, both hemispheres
161.6
2224
Female, age 72, unknown
127.5
2667
Female, age 75, unknown
126.0
2825
Male, age 18, unknown
119.0
1816
Male, age 51, unknown
107.8
1944
Female, age 72, unknown
103.8
2316
Male, age 76, right hemisphere
103.4
2407
Male, age 75, both hemispheres
100.3
1815
Male, age 53, unknown
93.2
1817
Female, age 42, unknown
92.7
2007
Male, age 72, unknown
86.0
Red nucleus nTPM: 95.1
2725
Female, age 75, unknown
112.3
1954
Female, age 42, unknown
109.9
1904
Male, age 53, unknown
101.9
2503
Female, age 72, unknown
101.6
2227
Male, age 72, unknown
98.3
2769
Male, age 72, unknown
98.1
2588
Male, age 74, left hemisphere
93.7
1865
Male, age 51, unknown
89.7
2823
Male, age 76, right hemisphere
86.5
2584
Male, age 75, left hemisphere
85.3
1821
Female, age 72, unknown
84.0
2785
Male, age 18, unknown
80.2
Substantia nigra nTPM: 100.7
2699
Male, age 18, unknown
121.0
2409
Female, age 72, unknown
109.2
2665
Male, age 74, both hemispheres
108.7
2590
Female, age 75, unknown
107.7
1941
Male, age 53, unknown
105.5
1916
Female, age 42, unknown
102.5
1851
Male, age 51, unknown
95.4
2583
Male, age 75, right hemisphere
92.8
1889
Female, age 72, unknown
83.9
2241
Male, age 72, unknown
80.0
Superior colliculus nTPM: 105.8
1995
Male, age 72, unknown
126.6
2664
Male, age 75, both hemispheres
124.3
2261
Male, age 18, unknown
115.9
1913
Female, age 42, unknown
109.5
1839
Male, age 51, unknown
106.8
1796
Male, age 53, unknown
105.9
2587
Male, age 74, left hemisphere
102.6
2668
Female, age 75, unknown
92.8
2087
Female, age 72, unknown
89.3
1895
Male, age 76, right hemisphere
84.6
Ventral tegmental area nTPM: 94.8
2021
Male, age 53, unknown
109.7
2223
Female, age 72, unknown
93.6
2218
Male, age 76, both hemispheres
93.2
1942
Male, age 51, unknown
92.9
1915
Female, age 42, unknown
90.7
2410
Female, age 72, unknown
88.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3.0
Samples: 139
Max nTPM: 7.3
Min nTPM: 1.1
Std nTPM: 1.1
Median nTPM: 2.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
5.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
5.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
5.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
4.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
4.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
4.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
4.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
4.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
3.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
3.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
3.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
3.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
3.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
3.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
3.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
3.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
2.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
2.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
2.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
2.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
2.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
2.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
2.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
2.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
2.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
2.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
2.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
2.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
2.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
2.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
2.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
1.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 6.2
Samples: 4
Max nTPM: 6.6
Min nTPM: 5.6
Sample A
Male
5.6
Sample B
Male
6.6
Sample C
Female
6.1
Sample D
Female
6.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.