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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
High
Photoreceptor cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
229.2
nTPM
GTEx:
229.2
nTPM
FANTOM5:
85.1
Scaled Tags Per Million
Pig:
292.0
nTPM
Mouse:
542.6
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042257
Photoreceptor cells
Medium
Immunohistochemical staining of human retina shows strong cytoplasmic positivity in cones and in outer plexiform layer.
100 ฮผm
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
229.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 229.2
Samples: 105
Max nTPM: 508.5
Min nTPM: 109.0
Std nTPM: 71.6
Median nTPM:
490_1
67 years, female
508.5
466_1
57 years, female
448.8
415_1
77 years, female
435.4
149_1
88 years, male
406.8
32_1
67 years, male
374.6
162_1
79 years, female
356.8
43_1
64 years, female
353.3
81_1
67 years, male
347.3
468_1
89 years, male
334.3
217_1
76 years, male
324.2
491_1
89 years, female
318.8
495_1
57 years, female
315.0
414_1
84 years, female
314.7
518_1
75 years, female
298.4
246_1
77 years, male
291.5
126_1
63 years, male
286.5
307_1
66 years, female
286.3
117_1
61 years, male
285.3
413_1
59 years, female
283.0
6_1
73 years, female
281.3
265_1
87 years, male
280.7
526_1
61 years, male
273.9
405_1
91 years, male
272.0
389_1
86 years, female
271.5
324_1
76 years, male
270.5
35_1
74 years, female
269.9
142_1
61 years, female
269.2
9_1
66 years, female
266.3
229_1
69 years, female
262.0
153_1
70 years, female
260.8
499_1
55 years, female
260.0
347_1
72 years, male
253.3
251_1
78 years, male
246.5
355_1
70 years, female
243.8
254_1
77 years, female
243.5
137_1
83 years, male
243.3
335_1
73 years, female
241.7
311_1
78 years, male
237.6
375_1
74 years, female
237.6
396_1
62 years, male
237.3
145_1
84 years, male
236.1
172_1
72 years, female
235.7
115_1
83 years, male
235.6
189_1
76 years, male
233.1
313_1
79 years, female
230.8
425_1
59 years, female
227.8
517_1
88 years, male
227.4
42_1
85 years, male
225.2
288_1
66 years, female
222.7
99_1
64 years, male
218.2
480_1
63 years, male
217.1
18_1
88 years, male
216.9
237_1
82 years, male
214.6
291_1
76 years, male
213.9
316_1
62 years, male
211.0
447_1
81 years, male
211.0
352_1
62 years, male
209.5
109_1
81 years, female
209.3
354_1
81 years, female
207.0
318_1
68 years, male
206.3
308_1
70 years, female
201.8
348_1
84 years, male
200.7
119_1
70 years, female
198.1
501_1
88 years, male
198.1
286_1
68 years, female
196.6
320_1
89 years, female
196.6
386_1
76 years, male
196.3
376_1
75 years, female
192.2
17_1
71 years, male
191.6
89_1
63 years, male
191.1
120_1
70 years, female
190.3
406_1
79 years, male
190.3
349_1
83 years, male
189.0
350_1
84 years, female
186.9
319_1
81 years, male
186.2
394_1
75 years, female
183.6
292_1
71 years, male
182.8
315_1
62 years, female
182.2
379_1
60 years, male
181.0
218_1
71 years, female
177.5
377_1
82 years, female
174.6
139_1
64 years, female
172.9
243_1
75 years, male
172.6
321_1
62 years, female
172.3
314_1
67 years, male
172.0
404_1
82 years, female
171.6
266_1
85 years, male
171.4
503_1
68 years, male
170.6
322_1
76 years, male
170.2
293_1
68 years, female
164.1
353_1
82 years, female
163.5
4_1
88 years, female
162.2
264_1
73 years, female
160.5
163_1
78 years, male
156.7
384_1
83 years, male
154.1
2_1
77 years, female
151.7
356_1
87 years, female
151.4
351_1
91 years, male
148.6
177_1
74 years, male
148.3
41_1
94 years, female
144.2
173_1
67 years, male
129.3
506_1
65 years, male
124.1
317_1
60 years, male
123.9
295_1
61 years, female
111.6
452_1
88 years, female
109.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.