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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
61.6
nTPM
HPA Brain:
112.2
nTPM
GTEx:
61.6
nTPM
FANTOM5:
303.1
Scaled Tags Per Million
Pig:
115.1
nTPM
Mouse:
301.1
nTPM
Allen mouse:
10.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
112.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 87.7
2148
Female, age 91, left hemisphere
95.7
1898
Male, age 80, left hemisphere
91.3
2621
Female, age 67, right hemisphere
91.0
2529
Female, age 94, left hemisphere
87.7
1911
Female, age 85, right hemisphere
86.0
1855
Male, age 76, left hemisphere
74.7
Dentate gyrus nTPM: 73.2
1927
Female, age 91, both hemispheres
98.6
2528
Male, age 74, both hemispheres
98.5
2246
Female, age 85, both hemispheres
76.0
2010
Male, age 76, both hemispheres
61.9
2531
Female, age 67, both hemispheres
57.9
2530
Female, age 94, left hemisphere
46.3
Entorhinal gyrus nTPM: 85.0
1938
Female, age 85, left hemisphere
107.2
2117
Female, age 91, right hemisphere
94.5
1787
Male, age 76, left hemisphere
83.7
2764
Male, age 80, right hemisphere
83.4
2613
Female, age 94, left hemisphere
76.6
2686
Male, age 75, right hemisphere
64.5
Hippocampus, CA1 nTPM: 81.3
2527
Male, age 74, both hemispheres
89.9
2749
Male, age 80, left hemisphere
89.5
1873
Female, age 85, both hemispheres
85.4
2045
Male, age 76, both hemispheres
74.5
2082
Female, age 91, right hemisphere
67.2
Hippocampus, CA2 nTPM: 75.6
1892
Male, age 76, both hemispheres
88.2
2113
Female, age 91, right hemisphere
83.6
2249
Male, age 74, both hemispheres
77.5
1940
Female, age 85, left hemisphere
72.3
2437
Female, age 94, left hemisphere
71.1
1963
Male, age 80, left hemisphere
60.8
Hippocampus, CA3 nTPM: 82.5
2436
Male, age 74, both hemispheres
93.3
2137
Male, age 80, left hemisphere
87.2
1867
Male, age 76, both hemispheres
86.8
1891
Female, age 85, both hemispheres
81.6
2620
Female, age 94, left hemisphere
75.2
2861
Female, age 67, both hemispheres
70.9
Parahippocampal cortex nTPM: 102.5
1850
Male, age 80, both hemispheres
119.0
2250
Female, age 67, right hemisphere
114.0
2245
Female, age 91, both hemispheres
113.5
2693
Female, age 94, both hemispheres
108.5
1933
Female, age 85, both hemispheres
107.4
1990
Female, age 91, right hemisphere
105.0
2622
Female, age 67, right hemisphere
104.8
2692
Male, age 74, both hemispheres
91.4
2532
Female, age 72, left hemisphere
84.7
2018
Male, age 76, both hemispheres
76.9
Perirhinal gyrus nTPM: 112.2
1841
Female, age 85, right hemisphere
133.1
1847
Female, age 91, left hemisphere
124.6
1794
Male, age 80, right hemisphere
118.9
2848
Male, age 76, right hemisphere
92.4
2521
Female, age 94, right hemisphere
92.2
Subiculum nTPM: 85.7
2619
Male, age 74, both hemispheres
112.9
2729
Female, age 91, right hemisphere
110.2
1977
Female, age 85, both hemispheres
78.8
2438
Female, age 94, left hemisphere
77.8
1901
Male, age 80, both hemispheres
73.3
2042
Male, age 76, both hemispheres
61.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 61.6
Samples: 197
Max nTPM: 145.2
Min nTPM: 9.0
Std nTPM: 26.5
Median nTPM: 59.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
145.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
128.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
127.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
120.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
118.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
115.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
114.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
114.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
110.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
107.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
107.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
106.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
106.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
105.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
105.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
103.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
103.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
102.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
102.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
102.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
100.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
100.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
98.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
97.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
96.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
95.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
94.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
94.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
93.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
93.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
92.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
89.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
88.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
87.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
87.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
86.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
84.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
83.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
83.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
83.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
81.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
80.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
80.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
79.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
77.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
77.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
77.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
76.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
76.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
75.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
75.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
75.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
75.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
74.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
74.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
74.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
73.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
73.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
73.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
73.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
72.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
72.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
72.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
71.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
71.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
71.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
70.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
69.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
68.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
68.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
68.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
68.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
67.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
67.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
67.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
66.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
66.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
66.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
65.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
65.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
64.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
64.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
64.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
63.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
63.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
63.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
63.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
62.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
62.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
61.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
61.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
61.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
61.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
60.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
60.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
60.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
60.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
60.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
59.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
59.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
59.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
59.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
59.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
59.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
58.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
57.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
57.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
57.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
57.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
56.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
56.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
55.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
55.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
55.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
54.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
54.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
54.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
54.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
53.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
53.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
52.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
50.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
50.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
49.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
49.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
49.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
49.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
49.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
48.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
48.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
48.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
47.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
46.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
46.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
46.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
45.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
45.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
45.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
45.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
45.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
45.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
44.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
44.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
43.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
43.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
43.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
43.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
43.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
43.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
43.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
42.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
41.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
41.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
41.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
40.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
40.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
39.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
38.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
37.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
37.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
37.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
37.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
37.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
36.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
36.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
35.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
35.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
35.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
34.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
34.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
33.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
30.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
29.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
28.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
28.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
27.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
26.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
26.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
25.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
24.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
23.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
23.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
22.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
21.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
19.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
19.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
19.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
18.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
17.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
17.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
17.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
16.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
9.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
301.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 301.2
Samples: 4
Max nTPM: 329.8
Min nTPM: 290.0
Sample A
Male
329.8
Sample B
Male
290.0
Sample C
Female
291.0
Sample D
Female
293.8
Hippocampal formation nTPM: 248.7
Samples: 4
Max nTPM: 290.9
Min nTPM: 211.4
Sample A
Male
290.9
Sample B
Male
248.6
Sample C
Female
211.4
Sample D
Female
244.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.