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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Sample id
Sample description
nTPM
Amygdala nTPM: 64.5
2514
Male, age 75, right hemisphere
90.4
1987
Female, age 91, left hemisphere
88.5
2517
Female, age 94, left hemisphere
62.2
2814
Male, age 76, right hemisphere
50.2
2695
Female, age 67, right hemisphere
31.2
Basal amygdala nTPM: 56.9
2243
Female, age 91, right hemisphere
77.1
2609
Male, age 75, right hemisphere
69.3
2685
Female, age 94, left hemisphere
60.8
2110
Male, age 80, left hemisphere
57.4
1955
Male, age 76, both hemispheres
53.6
2827
Female, age 67, right hemisphere
23.4
Central amygdala nTPM: 53.8
2701
Female, age 91, right hemisphere
66.2
2239
Male, age 80, left hemisphere
64.7
2515
Male, age 75, right hemisphere
54.8
2826
Female, age 94, left hemisphere
42.4
1905
Male, age 76, both hemispheres
41.0
Corticomedial amygdala nTPM: 66.7
2242
Female, age 91, right hemisphere
91.0
2429
Female, age 94, left hemisphere
84.9
2428
Male, age 75, right hemisphere
66.0
2829
Male, age 80, left hemisphere
65.6
2240
Male, age 76, both hemispheres
55.5
2535
Female, age 67, right hemisphere
37.3
Lateral amygdala nTPM: 48.1
2255
Female, age 91, right hemisphere
63.6
2516
Male, age 75, right hemisphere
56.2
1883
Male, age 76, both hemispheres
53.8
2256
Male, age 80, left hemisphere
50.1
2534
Female, age 94, left hemisphere
48.8
2830
Female, age 67, right hemisphere
16.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 79.7
Samples: 152
Max nTPM: 187.5
Min nTPM: 2.8
Std nTPM: 32.3
Median nTPM: 78.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
187.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
179.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
178.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
162.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
153.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
146.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
141.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
140.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
136.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
135.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
125.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
125.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
125.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
123.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
121.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
120.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
113.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
112.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
112.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
111.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
111.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
109.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
109.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
109.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
109.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
107.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
106.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
106.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
105.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
105.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
105.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
105.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
103.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
102.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
102.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
101.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
100.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
99.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
99.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
99.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
97.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
95.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
93.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
93.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
92.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
92.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
92.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
91.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
90.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
89.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
89.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
89.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
89.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
88.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
87.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
87.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
87.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
86.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
85.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
84.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
83.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
83.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
82.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
82.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
81.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
81.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
81.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
80.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
80.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
79.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
79.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
79.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
78.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
78.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
78.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
78.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
77.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
77.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
76.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
75.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
75.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
74.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
74.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
73.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
73.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
72.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
71.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
71.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
71.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
70.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
70.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
68.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
67.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
67.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
67.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
66.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
66.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
66.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
65.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
65.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
65.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
64.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
63.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
62.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
62.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
61.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
60.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
60.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
59.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
58.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
58.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
57.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
57.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
56.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
55.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
55.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
55.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
54.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
54.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
53.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
52.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
52.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
52.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
52.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
52.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
51.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
51.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
50.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
49.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
49.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
46.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
44.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
44.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
44.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
43.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
42.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
42.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
41.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
41.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
39.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
39.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
38.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
38.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
35.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
33.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
28.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
22.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
21.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
16.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
14.0
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
262.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 262.5
Samples: 4
Max nTPM: 311.6
Min nTPM: 230.5
Sample A
Male
230.5
Sample B
Male
247.1
Sample C
Female
311.6
Sample D
Female
260.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.