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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
106.8
nTPM
HPA Brain:
123.4
nTPM
GTEx:
106.8
nTPM
FANTOM5:
195.4
Scaled Tags Per Million
Pig:
111.4
nTPM
Mouse:
120.9
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA060686
Antibody CAB013097
Glial cells
Low
Low
Neuronal cells
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 101.4
1898
Male, age 80, left hemisphere
140.1
2529
Female, age 94, left hemisphere
99.6
1855
Male, age 76, left hemisphere
97.4
1911
Female, age 85, right hemisphere
93.9
2621
Female, age 67, right hemisphere
92.9
2148
Female, age 91, left hemisphere
84.4
Dentate gyrus nTPM: 105.9
2010
Male, age 76, both hemispheres
122.1
1927
Female, age 91, both hemispheres
117.0
2246
Female, age 85, both hemispheres
112.8
2528
Male, age 74, both hemispheres
103.3
2530
Female, age 94, left hemisphere
97.4
2531
Female, age 67, both hemispheres
83.0
Entorhinal gyrus nTPM: 91.6
1787
Male, age 76, left hemisphere
109.6
2764
Male, age 80, right hemisphere
106.1
1938
Female, age 85, left hemisphere
105.9
2117
Female, age 91, right hemisphere
87.2
2613
Female, age 94, left hemisphere
71.1
2686
Male, age 75, right hemisphere
69.6
Hippocampus, CA1 nTPM: 115.6
2749
Male, age 80, left hemisphere
157.6
1873
Female, age 85, both hemispheres
116.4
2527
Male, age 74, both hemispheres
113.3
2045
Male, age 76, both hemispheres
101.5
2082
Female, age 91, right hemisphere
88.9
Hippocampus, CA2 nTPM: 113.5
1892
Male, age 76, both hemispheres
135.1
2249
Male, age 74, both hemispheres
131.4
1963
Male, age 80, left hemisphere
121.5
2437
Female, age 94, left hemisphere
101.2
1940
Female, age 85, left hemisphere
97.7
2113
Female, age 91, right hemisphere
94.3
Hippocampus, CA3 nTPM: 102.8
2436
Male, age 74, both hemispheres
132.0
2137
Male, age 80, left hemisphere
126.2
1867
Male, age 76, both hemispheres
111.1
1891
Female, age 85, both hemispheres
94.5
2620
Female, age 94, left hemisphere
83.5
2861
Female, age 67, both hemispheres
69.7
Parahippocampal cortex nTPM: 98.6
1850
Male, age 80, both hemispheres
126.4
1933
Female, age 85, both hemispheres
110.4
2250
Female, age 67, right hemisphere
108.3
1990
Female, age 91, right hemisphere
107.8
2245
Female, age 91, both hemispheres
106.5
2532
Female, age 72, left hemisphere
102.3
2018
Male, age 76, both hemispheres
101.4
2693
Female, age 94, both hemispheres
91.0
2692
Male, age 74, both hemispheres
67.4
2622
Female, age 67, right hemisphere
64.2
Perirhinal gyrus nTPM: 123.4
1847
Female, age 91, left hemisphere
155.0
1794
Male, age 80, right hemisphere
133.7
1841
Female, age 85, right hemisphere
122.9
2521
Female, age 94, right hemisphere
106.8
2848
Male, age 76, right hemisphere
98.5
Subiculum nTPM: 95.5
1977
Female, age 85, both hemispheres
112.9
1901
Male, age 80, both hemispheres
106.6
2438
Female, age 94, left hemisphere
93.0
2729
Female, age 91, right hemisphere
88.3
2619
Male, age 74, both hemispheres
87.2
2042
Male, age 76, both hemispheres
85.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
106.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 106.8
Samples: 197
Max nTPM: 219.6
Min nTPM: 56.5
Std nTPM: 30.5
Median nTPM: 100.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
219.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
187.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
186.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
185.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
179.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
175.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
170.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
168.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
168.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
165.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
164.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
161.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
160.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
160.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
159.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
153.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
153.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
153.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
152.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
152.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
151.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
151.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
151.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
150.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
149.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
149.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
148.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
147.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
146.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
144.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
143.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
143.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
140.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
137.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
137.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
136.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
136.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
135.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
133.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
132.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
129.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
127.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
127.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
127.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
126.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
125.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
124.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
124.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
123.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
123.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
122.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
122.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
122.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
120.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
119.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
118.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
117.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
115.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
115.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
115.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
114.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
114.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
114.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
114.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
113.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
113.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
112.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
112.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
112.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
112.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
111.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
111.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
111.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
110.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
110.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
109.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
107.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
107.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
107.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
107.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
107.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
106.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
106.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
106.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
105.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
105.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
105.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
105.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
105.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
104.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
104.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
103.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
102.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
102.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
102.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
101.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
101.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
101.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
100.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
100.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
100.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
99.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
99.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
99.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
98.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
98.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
98.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
98.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
97.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
97.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
97.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
97.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
96.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
96.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
96.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
95.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
95.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
94.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
94.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
94.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
93.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
93.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
92.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
91.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
91.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
91.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
91.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
90.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
90.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
89.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
89.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
89.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
89.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
88.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
88.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
87.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
87.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
86.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
86.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
86.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
85.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
85.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
85.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
85.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
85.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
85.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
85.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
84.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
84.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
84.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
83.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
82.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
82.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
82.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
81.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
81.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
81.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
81.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
80.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
80.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
80.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
80.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
80.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
79.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
79.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
78.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
78.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
78.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
77.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
77.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
76.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
76.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
75.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
74.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
74.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
74.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
74.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
73.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
73.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
72.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
70.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
70.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
68.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
68.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
67.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
66.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
65.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
65.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
64.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
64.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
63.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
63.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
61.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
60.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
60.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
59.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
56.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
120.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 120.9
Samples: 4
Max nTPM: 127.4
Min nTPM: 117.7
Sample A
Male
118.1
Sample B
Male
117.7
Sample C
Female
120.3
Sample D
Female
127.4
Hippocampal formation nTPM: 120.8
Samples: 4
Max nTPM: 137.4
Min nTPM: 113.4
Sample A
Male
137.4
Sample B
Male
115.3
Sample C
Female
116.9
Sample D
Female
113.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.