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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
51.9
nTPM
HPA Brain:
84.8
nTPM
GTEx:
51.9
nTPM
FANTOM5:
89.4
Scaled Tags Per Million
Pig:
36.4
nTPM
Mouse:
39.9
nTPM
Allen mouse:
1.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA056614
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 54.3
1911
Female, age 85, right hemisphere
73.3
2529
Female, age 94, left hemisphere
65.7
2621
Female, age 67, right hemisphere
51.5
1855
Male, age 76, left hemisphere
47.4
1898
Male, age 80, left hemisphere
44.8
2148
Female, age 91, left hemisphere
43.1
Dentate gyrus nTPM: 57.3
2530
Female, age 94, left hemisphere
113.8
2528
Male, age 74, both hemispheres
55.2
2246
Female, age 85, both hemispheres
53.8
2010
Male, age 76, both hemispheres
52.0
2531
Female, age 67, both hemispheres
38.8
1927
Female, age 91, both hemispheres
30.4
Entorhinal gyrus nTPM: 60.3
2117
Female, age 91, right hemisphere
98.5
2764
Male, age 80, right hemisphere
74.3
2613
Female, age 94, left hemisphere
54.6
1787
Male, age 76, left hemisphere
46.9
1938
Female, age 85, left hemisphere
46.9
2686
Male, age 75, right hemisphere
40.8
Hippocampus, CA1 nTPM: 38.9
2082
Female, age 91, right hemisphere
50.5
1873
Female, age 85, both hemispheres
47.4
2527
Male, age 74, both hemispheres
47.1
2749
Male, age 80, left hemisphere
36.7
2045
Male, age 76, both hemispheres
12.7
Hippocampus, CA2 nTPM: 55.6
2437
Female, age 94, left hemisphere
68.6
1963
Male, age 80, left hemisphere
64.3
2249
Male, age 74, both hemispheres
63.4
1940
Female, age 85, left hemisphere
55.8
2113
Female, age 91, right hemisphere
52.3
1892
Male, age 76, both hemispheres
29.2
Hippocampus, CA3 nTPM: 34.5
1891
Female, age 85, both hemispheres
85.7
1867
Male, age 76, both hemispheres
39.9
2436
Male, age 74, both hemispheres
32.5
2137
Male, age 80, left hemisphere
20.6
2861
Female, age 67, both hemispheres
14.6
2620
Female, age 94, left hemisphere
13.4
Parahippocampal cortex nTPM: 43.3
2532
Female, age 72, left hemisphere
77.3
2692
Male, age 74, both hemispheres
66.1
1990
Female, age 91, right hemisphere
57.2
1850
Male, age 80, both hemispheres
44.2
2245
Female, age 91, both hemispheres
41.9
2018
Male, age 76, both hemispheres
37.7
1933
Female, age 85, both hemispheres
36.1
2693
Female, age 94, both hemispheres
33.7
2250
Female, age 67, right hemisphere
23.6
2622
Female, age 67, right hemisphere
14.7
Perirhinal gyrus nTPM: 28.7
2848
Male, age 76, right hemisphere
43.4
2521
Female, age 94, right hemisphere
32.9
1794
Male, age 80, right hemisphere
27.8
1847
Female, age 91, left hemisphere
21.5
1841
Female, age 85, right hemisphere
17.7
Subiculum nTPM: 84.8
2042
Male, age 76, both hemispheres
129.4
1901
Male, age 80, both hemispheres
104.7
2438
Female, age 94, left hemisphere
99.9
1977
Female, age 85, both hemispheres
67.5
2619
Male, age 74, both hemispheres
63.0
2729
Female, age 91, right hemisphere
44.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 51.9
Samples: 197
Max nTPM: 221.2
Min nTPM: 4.4
Std nTPM: 37.0
Median nTPM: 41.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
221.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
170.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
158.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
155.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
155.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
140.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
130.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
126.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
124.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
123.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
117.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
117.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
112.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
111.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
109.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
109.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
108.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
107.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
103.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
102.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
102.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
101.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
99.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
98.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
96.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
94.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
94.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
93.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
91.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
90.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
90.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
89.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
89.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
88.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
87.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
86.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
82.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
82.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
81.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
81.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
81.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
80.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
79.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
77.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
76.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
74.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
74.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
74.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
74.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
74.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
73.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
72.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
71.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
70.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
69.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
68.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
66.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
66.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
66.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
66.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
65.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
64.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
63.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
62.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
62.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
61.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
61.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
60.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
59.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
59.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
58.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
57.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
57.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
56.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
52.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
52.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
52.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
51.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
51.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
50.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
49.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
49.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
49.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
48.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
47.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
47.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
47.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
46.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
46.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
46.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
45.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
44.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
43.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
42.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
42.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
42.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
41.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
41.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
41.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
41.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
41.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
41.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
40.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
39.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
39.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
39.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
38.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
38.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
37.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
37.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
37.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
36.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
36.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
36.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
35.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
35.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
33.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
33.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
32.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
32.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
32.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
32.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
32.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
31.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
31.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
31.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
30.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
30.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
29.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
29.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
28.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
28.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
27.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
26.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
26.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
26.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
25.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
25.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
25.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
25.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
24.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
24.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
24.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
24.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
23.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
23.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
22.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
22.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
22.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
22.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
22.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
22.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
22.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
21.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
21.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
21.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
21.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
21.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
21.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
21.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
20.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
20.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
18.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
17.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
17.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
17.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
16.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
16.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
15.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
15.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
15.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
14.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
14.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
14.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
13.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
13.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
12.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
12.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
12.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
11.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
11.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
10.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
10.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
10.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
9.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
8.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
8.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
5.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
4.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
4.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
4.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
4.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 18.4
Samples: 4
Max nTPM: 26.6
Min nTPM: 10.0
Sample A
Male
26.6
Sample B
Male
17.7
Sample C
Female
19.2
Sample D
Female
10.0
Hippocampal formation nTPM: 39.9
Samples: 4
Max nTPM: 63.4
Min nTPM: 24.6
Sample A
Male
24.6
Sample B
Male
32.8
Sample C
Female
63.4
Sample D
Female
38.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.