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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
160.0
nTPM
HPA Brain:
426.9
nTPM
GTEx:
160.0
nTPM
FANTOM5:
66.9
Scaled Tags Per Million
Pig:
611.2
nTPM
Mouse:
905.9
nTPM
Allen mouse:
20.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
426.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 337.2
1827
Male, age 72, unknown
436.6
2219
Male, age 76, both hemispheres
436.3
2019
Male, age 18, unknown
422.4
2828
Female, age 72, unknown
378.4
2666
Male, age 74, left hemisphere
370.1
2411
Female, age 72, unknown
348.1
2586
Male, age 75, left hemisphere
341.5
1870
Female, age 42, unknown
221.2
1833
Male, age 53, unknown
211.1
1830
Male, age 51, unknown
206.4
Dorsal raphe nucleus nTPM: 321.4
2298
Female, age 72, unknown
397.7
1828
Male, age 53, unknown
384.0
2047
Male, age 72, unknown
353.6
2750
Male, age 76, both hemispheres
279.8
2016
Female, age 72, unknown
191.6
Inferior colliculus nTPM: 278.3
2097
Female, age 72, unknown
378.0
1890
Male, age 53, unknown
303.5
1848
Female, age 42, unknown
259.2
2849
Male, age 72, unknown
172.5
Median raphe nucleus nTPM: 288.3
2220
Male, age 76, midline
288.3
Periaquaductal grey, anterior nTPM: 337.7
1795
Male, age 51, unknown
426.8
1947
Male, age 18, unknown
347.4
2502
Female, age 75, unknown
238.9
Periaquaductal grey, dorsal nTPM: 214.1
1831
Male, age 72, unknown
281.1
2464
Female, age 72, unknown
216.2
1840
Male, age 53, unknown
181.3
2850
Male, age 76, both hemispheres
177.9
Periaquaductal grey, lateral nTPM: 204.8
2053
Male, age 18, unknown
228.4
2272
Male, age 74, both hemispheres
223.2
2140
Male, age 76, both hemispheres
162.7
Pretectal area nTPM: 414.8
1944
Female, age 72, unknown
678.6
1816
Male, age 51, unknown
665.0
2007
Male, age 72, unknown
597.7
1817
Female, age 42, unknown
576.8
2667
Female, age 75, unknown
491.0
1815
Male, age 53, unknown
421.0
2224
Female, age 72, unknown
276.4
2273
Male, age 74, both hemispheres
245.5
2825
Male, age 18, unknown
220.0
2407
Male, age 75, both hemispheres
198.6
2316
Male, age 76, right hemisphere
192.5
Red nucleus nTPM: 305.5
1821
Female, age 72, unknown
408.2
2785
Male, age 18, unknown
373.1
2503
Female, age 72, unknown
326.9
2823
Male, age 76, right hemisphere
326.5
2725
Female, age 75, unknown
307.3
1954
Female, age 42, unknown
299.0
1865
Male, age 51, unknown
281.0
2769
Male, age 72, unknown
280.2
2588
Male, age 74, left hemisphere
275.1
1904
Male, age 53, unknown
271.7
2227
Male, age 72, unknown
266.4
2584
Male, age 75, left hemisphere
250.0
Substantia nigra nTPM: 426.9
1916
Female, age 42, unknown
685.9
1941
Male, age 53, unknown
677.0
1889
Female, age 72, unknown
551.8
1851
Male, age 51, unknown
468.3
2409
Female, age 72, unknown
392.5
2665
Male, age 74, both hemispheres
380.9
2241
Male, age 72, unknown
307.4
2583
Male, age 75, right hemisphere
271.7
2699
Male, age 18, unknown
271.1
2590
Female, age 75, unknown
262.2
Superior colliculus nTPM: 322.9
2087
Female, age 72, unknown
594.6
2668
Female, age 75, unknown
471.8
2261
Male, age 18, unknown
392.9
1796
Male, age 53, unknown
368.8
1913
Female, age 42, unknown
268.1
1895
Male, age 76, right hemisphere
265.7
2664
Male, age 75, both hemispheres
237.3
1995
Male, age 72, unknown
227.0
1839
Male, age 51, unknown
217.5
2587
Male, age 74, left hemisphere
185.4
Ventral tegmental area nTPM: 363.4
2410
Female, age 72, unknown
599.7
2218
Male, age 76, both hemispheres
462.5
1915
Female, age 42, unknown
411.6
1942
Male, age 51, unknown
289.5
2223
Female, age 72, unknown
214.0
2021
Male, age 53, unknown
203.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
160.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 160.0
Samples: 139
Max nTPM: 1137.6
Min nTPM: 18.1
Std nTPM: 148.1
Median nTPM: 117.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1137.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
844.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
545.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
534.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
450.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
424.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
399.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
379.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
374.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
365.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
349.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
342.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
337.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
334.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
327.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
323.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
312.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
302.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
294.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
292.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
283.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
283.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
269.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
261.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
255.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
252.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
226.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
222.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
218.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
215.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
213.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
207.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
205.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
201.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
200.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
199.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
196.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
185.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
182.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
177.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
174.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
173.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
173.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
170.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
170.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
164.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
160.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
159.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
158.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
144.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
140.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
139.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
137.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
136.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
136.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
135.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
135.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
135.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
134.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
134.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
133.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
128.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
125.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
124.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
123.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
122.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
122.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
121.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
118.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
117.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
115.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
114.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
114.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
114.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
113.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
109.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
107.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
106.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
105.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
103.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
103.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
103.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
101.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
101.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
97.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
97.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
94.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
92.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
90.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
88.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
87.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
86.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
86.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
84.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
83.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
82.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
80.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
80.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
79.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
76.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
75.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
74.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
73.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
71.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
70.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
70.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
69.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
69.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
65.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
63.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
62.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
62.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
60.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
59.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
56.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
56.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
55.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
55.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
52.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
52.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
48.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
47.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
46.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
44.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
40.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
40.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
38.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
38.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
37.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
36.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
35.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
35.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
33.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
33.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
28.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
24.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
905.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 905.9
Samples: 4
Max nTPM: 952.4
Min nTPM: 863.3
Sample A
Male
863.3
Sample B
Male
894.0
Sample C
Female
952.4
Sample D
Female
914.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.