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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
158.7
nTPM
HPA Brain:
588.0
nTPM
GTEx:
158.7
nTPM
FANTOM5:
424.2
Scaled Tags Per Million
Pig:
468.7
nTPM
Mouse:
992.2
nTPM
Allen mouse:
22.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA015313
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
588.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 430.2
1898
Male, age 80, left hemisphere
505.9
2621
Female, age 67, right hemisphere
498.0
2148
Female, age 91, left hemisphere
494.1
1855
Male, age 76, left hemisphere
408.1
1911
Female, age 85, right hemisphere
350.2
2529
Female, age 94, left hemisphere
325.1
Dentate gyrus nTPM: 484.7
1927
Female, age 91, both hemispheres
660.8
2528
Male, age 74, both hemispheres
523.8
2530
Female, age 94, left hemisphere
522.3
2531
Female, age 67, both hemispheres
439.6
2010
Male, age 76, both hemispheres
432.1
2246
Female, age 85, both hemispheres
329.2
Entorhinal gyrus nTPM: 411.1
2613
Female, age 94, left hemisphere
554.4
2764
Male, age 80, right hemisphere
470.9
1938
Female, age 85, left hemisphere
418.4
1787
Male, age 76, left hemisphere
404.5
2686
Male, age 75, right hemisphere
346.8
2117
Female, age 91, right hemisphere
271.7
Hippocampus, CA1 nTPM: 588.0
2749
Male, age 80, left hemisphere
1031.7
2527
Male, age 74, both hemispheres
587.7
2045
Male, age 76, both hemispheres
451.9
1873
Female, age 85, both hemispheres
448.3
2082
Female, age 91, right hemisphere
420.1
Hippocampus, CA2 nTPM: 451.7
1963
Male, age 80, left hemisphere
639.8
1892
Male, age 76, both hemispheres
491.4
2249
Male, age 74, both hemispheres
460.5
2437
Female, age 94, left hemisphere
446.5
2113
Female, age 91, right hemisphere
361.6
1940
Female, age 85, left hemisphere
310.5
Hippocampus, CA3 nTPM: 456.2
2137
Male, age 80, left hemisphere
578.4
2620
Female, age 94, left hemisphere
550.7
2861
Female, age 67, both hemispheres
445.1
1867
Male, age 76, both hemispheres
431.9
2436
Male, age 74, both hemispheres
431.8
1891
Female, age 85, both hemispheres
299.6
Parahippocampal cortex nTPM: 406.5
1990
Female, age 91, right hemisphere
509.6
2245
Female, age 91, both hemispheres
491.5
1850
Male, age 80, both hemispheres
438.8
2250
Female, age 67, right hemisphere
438.4
1933
Female, age 85, both hemispheres
418.7
2622
Female, age 67, right hemisphere
378.5
2692
Male, age 74, both hemispheres
376.4
2532
Female, age 72, left hemisphere
352.5
2693
Female, age 94, both hemispheres
340.8
2018
Male, age 76, both hemispheres
320.2
Perirhinal gyrus nTPM: 501.6
1847
Female, age 91, left hemisphere
826.7
1794
Male, age 80, right hemisphere
487.1
2521
Female, age 94, right hemisphere
469.7
1841
Female, age 85, right hemisphere
403.1
2848
Male, age 76, right hemisphere
321.7
Subiculum nTPM: 359.4
2619
Male, age 74, both hemispheres
401.5
1901
Male, age 80, both hemispheres
391.1
1977
Female, age 85, both hemispheres
375.8
2438
Female, age 94, left hemisphere
369.7
2729
Female, age 91, right hemisphere
346.5
2042
Male, age 76, both hemispheres
271.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 158.7
Samples: 197
Max nTPM: 522.2
Min nTPM: 24.6
Std nTPM: 89.8
Median nTPM: 142.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
522.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
447.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
409.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
360.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
360.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
354.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
347.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
327.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
325.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
325.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
323.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
321.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
318.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
301.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
298.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
296.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
292.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
291.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
287.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
285.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
284.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
278.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
273.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
269.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
268.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
268.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
268.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
268.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
267.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
263.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
256.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
256.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
247.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
241.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
240.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
236.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
231.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
230.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
230.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
229.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
228.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
228.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
227.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
221.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
220.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
215.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
214.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
213.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
212.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
210.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
210.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
209.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
205.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
202.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
201.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
201.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
200.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
199.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
199.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
196.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
190.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
190.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
188.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
186.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
185.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
185.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
184.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
184.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
184.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
184.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
182.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
181.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
175.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
173.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
170.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
170.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
169.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
169.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
168.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
167.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
166.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
165.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
164.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
164.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
163.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
161.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
158.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
158.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
154.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
154.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
152.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
150.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
147.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
146.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
146.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
145.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
144.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
142.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
142.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
142.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
140.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
139.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
139.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
138.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
136.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
136.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
135.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
133.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
133.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
132.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
131.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
130.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
128.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
127.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
126.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
126.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
125.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
123.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
123.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
121.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
120.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
120.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
119.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
119.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
118.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
118.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
116.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
116.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
116.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
115.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
113.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
111.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
110.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
109.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
104.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
103.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
101.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
100.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
100.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
99.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
98.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
96.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
95.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
94.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
94.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
93.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
92.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
88.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
85.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
85.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
84.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
84.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
83.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
80.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
80.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
79.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
79.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
76.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
76.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
74.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
72.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
72.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
72.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
72.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
71.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
69.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
66.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
65.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
65.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
65.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
62.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
61.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
59.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
58.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
58.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
57.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
56.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
55.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
52.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
47.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
45.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
43.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
42.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
40.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
40.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
39.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
39.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
39.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
39.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
38.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
34.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
33.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
32.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
31.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
30.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
24.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
992.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 992.2
Samples: 4
Max nTPM: 1068.8
Min nTPM: 927.9
Sample A
Male
956.8
Sample B
Male
1015.4
Sample C
Female
927.9
Sample D
Female
1068.8
Hippocampal formation nTPM: 912.4
Samples: 4
Max nTPM: 940.8
Min nTPM: 873.2
Sample A
Male
908.7
Sample B
Male
926.8
Sample C
Female
940.8
Sample D
Female
873.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.