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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.0
nTPM
HPA Brain:
48.9
nTPM
GTEx:
34.0
nTPM
FANTOM5:
57.0
Scaled Tags Per Million
Pig:
20.9
nTPM
Mouse:
112.0
nTPM
Allen mouse:
1.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA051132
Antibody CAB046473
Glial cells
Medium
Low
Neuronal cells
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 37.0
1855
Male, age 76, left hemisphere
44.4
1898
Male, age 80, left hemisphere
43.7
2621
Female, age 67, right hemisphere
42.8
1911
Female, age 85, right hemisphere
33.0
2148
Female, age 91, left hemisphere
32.0
2529
Female, age 94, left hemisphere
26.4
Dentate gyrus nTPM: 37.6
2531
Female, age 67, both hemispheres
43.5
2246
Female, age 85, both hemispheres
40.3
2010
Male, age 76, both hemispheres
40.2
2530
Female, age 94, left hemisphere
37.2
1927
Female, age 91, both hemispheres
37.1
2528
Male, age 74, both hemispheres
27.3
Entorhinal gyrus nTPM: 36.4
2613
Female, age 94, left hemisphere
44.0
1787
Male, age 76, left hemisphere
41.7
2764
Male, age 80, right hemisphere
37.7
2117
Female, age 91, right hemisphere
36.8
1938
Female, age 85, left hemisphere
32.7
2686
Male, age 75, right hemisphere
25.5
Hippocampus, CA1 nTPM: 37.1
2045
Male, age 76, both hemispheres
42.1
2749
Male, age 80, left hemisphere
41.4
2082
Female, age 91, right hemisphere
39.2
1873
Female, age 85, both hemispheres
34.7
2527
Male, age 74, both hemispheres
27.9
Hippocampus, CA2 nTPM: 39.2
1940
Female, age 85, left hemisphere
62.3
1892
Male, age 76, both hemispheres
43.2
2113
Female, age 91, right hemisphere
37.2
2437
Female, age 94, left hemisphere
36.2
1963
Male, age 80, left hemisphere
32.4
2249
Male, age 74, both hemispheres
23.7
Hippocampus, CA3 nTPM: 35.6
1867
Male, age 76, both hemispheres
44.9
2861
Female, age 67, both hemispheres
41.7
2620
Female, age 94, left hemisphere
40.2
2137
Male, age 80, left hemisphere
37.0
1891
Female, age 85, both hemispheres
28.0
2436
Male, age 74, both hemispheres
21.6
Parahippocampal cortex nTPM: 41.4
2250
Female, age 67, right hemisphere
67.6
2532
Female, age 72, left hemisphere
48.8
1933
Female, age 85, both hemispheres
47.9
2018
Male, age 76, both hemispheres
47.8
2693
Female, age 94, both hemispheres
46.5
2245
Female, age 91, both hemispheres
45.7
1990
Female, age 91, right hemisphere
32.2
2622
Female, age 67, right hemisphere
31.0
1850
Male, age 80, both hemispheres
30.6
2692
Male, age 74, both hemispheres
16.1
Perirhinal gyrus nTPM: 48.9
2521
Female, age 94, right hemisphere
69.7
1847
Female, age 91, left hemisphere
49.3
1841
Female, age 85, right hemisphere
45.2
1794
Male, age 80, right hemisphere
40.7
2848
Male, age 76, right hemisphere
39.5
Subiculum nTPM: 32.1
1977
Female, age 85, both hemispheres
41.0
2729
Female, age 91, right hemisphere
38.5
2042
Male, age 76, both hemispheres
34.7
1901
Male, age 80, both hemispheres
30.8
2619
Male, age 74, both hemispheres
25.2
2438
Female, age 94, left hemisphere
22.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 34.0
Samples: 197
Max nTPM: 75.7
Min nTPM: 7.5
Std nTPM: 14.5
Median nTPM: 33.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
75.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
73.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
72.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
71.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
70.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
62.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
61.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
60.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
59.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
59.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
58.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
57.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
56.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
56.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
56.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
55.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
55.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
54.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
53.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
53.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
53.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
53.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
52.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
51.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
51.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
51.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
50.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
50.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
48.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
48.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
48.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
48.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
48.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
47.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
47.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
47.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
47.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
46.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
46.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
46.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
46.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
45.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
45.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
45.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
44.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
43.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
43.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
43.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
42.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
42.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
42.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
42.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
42.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
41.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
41.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
41.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
41.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
41.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
41.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
40.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
40.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
40.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
40.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
40.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
40.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
40.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
40.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
39.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
39.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
39.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
38.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
38.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
38.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
38.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
37.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
37.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
37.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
37.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
37.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
37.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
37.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
36.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
36.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
36.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
35.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
35.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
35.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
35.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
34.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
34.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
34.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
34.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
34.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
34.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
34.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
33.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
33.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
33.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
33.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
33.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
32.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
32.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
32.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
32.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
31.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
31.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
31.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
31.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
31.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
31.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
31.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
30.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
30.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
30.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
29.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
29.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
29.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
29.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
29.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
28.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
28.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
28.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
27.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
27.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
27.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
26.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
26.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
26.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
26.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
26.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
26.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
25.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
25.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
25.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
25.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
24.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
24.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
24.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
24.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
24.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
23.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
23.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
23.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
22.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
22.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
22.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
21.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
21.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
21.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
21.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
21.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
21.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
21.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
20.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
20.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
19.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
19.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
19.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
19.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
19.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
18.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
17.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
17.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
16.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
16.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
16.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
16.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
16.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
15.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
15.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
15.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
14.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
14.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
14.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
13.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
13.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
12.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
12.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
12.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
11.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
11.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
11.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
10.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
10.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
9.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
9.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
8.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
8.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
112.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 112.0
Samples: 4
Max nTPM: 133.2
Min nTPM: 95.4
Sample A
Male
104.2
Sample B
Male
133.2
Sample C
Female
95.4
Sample D
Female
115.0
Hippocampal formation nTPM: 97.1
Samples: 4
Max nTPM: 109.4
Min nTPM: 86.3
Sample A
Male
109.4
Sample B
Male
93.2
Sample C
Female
86.3
Sample D
Female
99.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.