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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
67.1
nTPM
Monaco:
12.5
nTPM
Schmiedel:
2.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.1
HPA sample
nTPM
gdT-cell nTPM: 67.1
Samples: 6
Max nTPM: 148.8
Min nTPM: 28.8
P10809_1007
28.8
P10809_1022
148.8
P10809_1041
61.9
P10809_1060
31.6
P10809_1077
75.2
P10809_1098
56.4
MAIT T-cell nTPM: 25.5
Samples: 6
Max nTPM: 64.9
Min nTPM: 4.7
P10809_1006
4.7
P10809_1024
64.9
P10809_1043
31.5
P10809_1062
7.6
P10809_1083
31.6
P10809_1097
12.8
Memory CD4 T-cell nTPM: 18.3
Samples: 6
Max nTPM: 34.8
Min nTPM: 11.0
P10809_1014
11.0
P10809_1026
17.8
P10809_1045
12.4
P10809_1064
20.2
P10809_1086
34.8
P10809_1113
13.8
Memory CD8 T-cell nTPM: 45.9
Samples: 5
Max nTPM: 89.1
Min nTPM: 19.1
P10809_1012
19.1
P10809_1027
89.1
P10809_1046
46.3
P10809_1065
35.6
P10809_1111
39.4
Naive CD4 T-cell nTPM: 17.0
Samples: 6
Max nTPM: 32.6
Min nTPM: 3.7
P10809_1015
3.7
P10809_1030
18.2
P10809_1049
20.0
P10809_1068
8.5
P10809_1085
32.6
P10809_1112
18.7
Naive CD8 T-cell nTPM: 31.3
Samples: 6
Max nTPM: 50.4
Min nTPM: 5.9
P10809_1016
5.9
P10809_1031
50.4
P10809_1050
32.6
P10809_1069
29.4
P10809_1087
47.0
P10809_1110
22.3
T-reg nTPM: 13.7
Samples: 6
Max nTPM: 25.8
Min nTPM: 1.3
P10809_1018
11.9
P10809_1037
13.0
P10809_1056
1.3
P10809_1075
15.2
P10809_1094
14.8
P10809_1106
25.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 0.9
Samples: 4
Max nTPM: 1.7
Min nTPM: 0.0
RHH5202_R3573
0.0
RHH5230_R3602
1.4
RHH5259_R3631
1.7
RHH5288_R3660
0.5
Effector memory CD8 T-cell nTPM: 3.6
Samples: 4
Max nTPM: 6.8
Min nTPM: 1.6
RHH5203_R3574
1.6
RHH5231_R3603
4.2
RHH5260_R3632
6.8
RHH5289_R3661
1.7
MAIT T-cell nTPM: 1.1
Samples: 4
Max nTPM: 2.3
Min nTPM: 0.6
RHH5233_R3605
1.0
RHH5205_R3576
2.3
RHH5262_R3634
0.6
RHH5297_R3663
0.6
Memory CD4 T-cell TFH nTPM: 1.2
Samples: 4
Max nTPM: 1.9
Min nTPM: 0.2
RHH5300_R3666
1.9
RHH5236_R3608
0.7
RHH5265_R3637
0.2
RHH5208_R3579
1.8
Memory CD4 T-cell Th1 nTPM: 1.9
Samples: 4
Max nTPM: 2.7
Min nTPM: 0.7
RHH5210_R3581
2.1
RHH5302_R3668
2.0
RHH5238_R3610
2.7
RHH5267_R3639
0.7
Memory CD4 T-cell Th1/Th17 nTPM: 1.6
Samples: 4
Max nTPM: 5.0
Min nTPM: 0.0
RHH5303_R3669
0.9
RHH5211_R3582
5.0
RHH5239_R3611
0.5
RHH5268_R3640
0.0
Memory CD4 T-cell Th17 nTPM: 0.3
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.0
RHH5304_R3670
0.6
RHH5212_R3583
0.0
RHH5240_R3612
0.5
RHH5269_R3641
0.2
Memory CD4 T-cell Th2 nTPM: 0.5
Samples: 4
Max nTPM: 1.3
Min nTPM: 0.0
RHH5305_R3671
0.0
RHH5213_R3584
1.3
RHH5241_R3613
0.3
RHH5270_R3642
0.3
Naive CD4 T-cell nTPM: 1.8
Samples: 4
Max nTPM: 2.8
Min nTPM: 0.0
RHH5306_R3672
2.0
RHH5214_R3585
2.4
RHH5242_R3614
2.8
RHH5271_R3643
0.0
Naive CD8 T-cell nTPM: 0.1
Samples: 4
Max nTPM: 0.2
Min nTPM: 0.0
RHH5201_R3572
0.0
RHH5229_R3601
0.0
RHH5258_R3630
0.2
RHH5287_R3659
0.1
Non-Vd2 gdTCR nTPM: 9.2
Samples: 4
Max nTPM: 14.2
Min nTPM: 6.9
RHH5235_R3607
8.1
RHH5264_R3636
7.6
RHH5207_R3578
6.9
RHH5299_R3665
14.2
T-reg nTPM: 1.0
Samples: 4
Max nTPM: 1.7
Min nTPM: 0.2
RHH5301_R3667
0.2
RHH5237_R3609
1.0
RHH5266_R3638
1.1
RHH5209_R3580
1.7
Terminal effector memory CD4 T-cell nTPM: 12.2
Samples: 2
Max nTPM: 13.9
Min nTPM: 10.4
RHH5243_R3615
13.9
RHH5272_R3644
10.4
Terminal effector memory CD8 T-cell nTPM: 12.5
Samples: 4
Max nTPM: 22.4
Min nTPM: 7.5
RHH5232_R3604
8.6
RHH5204_R3575
22.4
RHH5261_R3633
11.6
RHH5296_R3662
7.5
Vd2 gdTCR nTPM: 8.8
Samples: 4
Max nTPM: 20.1
Min nTPM: 4.5
RHH5234_R3606
4.5
RHH5206_R3577
20.1
RHH5263_R3635
5.0
RHH5298_R3664
5.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
