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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
58.6
nTPM
Monaco:
150.6
nTPM
Schmiedel:
108.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.6
HPA sample
nTPM
gdT-cell nTPM: 40.6
Samples: 6
Max nTPM: 71.3
Min nTPM: 16.7
P10809_1007
40.2
P10809_1022
27.5
P10809_1041
71.3
P10809_1060
28.9
P10809_1077
58.8
P10809_1098
16.7
MAIT T-cell nTPM: 42.8
Samples: 6
Max nTPM: 70.6
Min nTPM: 10.9
P10809_1006
43.8
P10809_1024
56.6
P10809_1043
70.6
P10809_1062
28.0
P10809_1083
47.1
P10809_1097
10.9
Memory CD4 T-cell nTPM: 44.7
Samples: 6
Max nTPM: 62.4
Min nTPM: 17.9
P10809_1014
45.9
P10809_1026
51.6
P10809_1045
62.4
P10809_1064
35.7
P10809_1086
54.6
P10809_1113
17.9
Memory CD8 T-cell nTPM: 36.9
Samples: 5
Max nTPM: 50.4
Min nTPM: 14.4
P10809_1012
41.2
P10809_1027
50.4
P10809_1046
43.8
P10809_1065
34.8
P10809_1111
14.4
Naive CD4 T-cell nTPM: 43.9
Samples: 6
Max nTPM: 60.8
Min nTPM: 15.3
P10809_1015
48.9
P10809_1030
59.2
P10809_1049
51.5
P10809_1068
27.6
P10809_1085
60.8
P10809_1112
15.3
Naive CD8 T-cell nTPM: 58.6
Samples: 6
Max nTPM: 95.3
Min nTPM: 20.0
P10809_1016
47.1
P10809_1031
89.8
P10809_1050
95.3
P10809_1069
25.9
P10809_1087
73.3
P10809_1110
20.0
T-reg nTPM: 32.8
Samples: 6
Max nTPM: 44.0
Min nTPM: 14.9
P10809_1018
42.5
P10809_1037
32.1
P10809_1056
44.0
P10809_1075
14.9
P10809_1094
42.2
P10809_1106
21.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
150.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 117.6
Samples: 4
Max nTPM: 222.9
Min nTPM: 77.5
RHH5202_R3573
81.5
RHH5230_R3602
88.3
RHH5259_R3631
77.5
RHH5288_R3660
222.9
Effector memory CD8 T-cell nTPM: 123.2
Samples: 4
Max nTPM: 176.1
Min nTPM: 74.6
RHH5203_R3574
74.6
RHH5231_R3603
176.1
RHH5260_R3632
77.1
RHH5289_R3661
164.8
MAIT T-cell nTPM: 116.4
Samples: 4
Max nTPM: 183.3
Min nTPM: 46.9
RHH5233_R3605
133.6
RHH5205_R3576
46.9
RHH5262_R3634
101.6
RHH5297_R3663
183.3
Memory CD4 T-cell TFH nTPM: 150.7
Samples: 4
Max nTPM: 229.8
Min nTPM: 100.3
RHH5300_R3666
171.3
RHH5236_R3608
229.8
RHH5265_R3637
101.2
RHH5208_R3579
100.3
Memory CD4 T-cell Th1 nTPM: 113.6
Samples: 4
Max nTPM: 200.6
Min nTPM: 61.8
RHH5210_R3581
107.2
RHH5302_R3668
200.6
RHH5238_R3610
84.6
RHH5267_R3639
61.8
Memory CD4 T-cell Th1/Th17 nTPM: 117.6
Samples: 4
Max nTPM: 249.9
Min nTPM: 63.2
RHH5303_R3669
249.9
RHH5211_R3582
88.1
RHH5239_R3611
63.2
RHH5268_R3640
69.0
Memory CD4 T-cell Th17 nTPM: 85.6
Samples: 4
Max nTPM: 112.0
Min nTPM: 67.2
RHH5304_R3670
112.0
RHH5212_R3583
89.6
RHH5240_R3612
73.4
RHH5269_R3641
67.2
Memory CD4 T-cell Th2 nTPM: 130.9
Samples: 4
Max nTPM: 199.5
Min nTPM: 65.1
RHH5305_R3671
176.1
RHH5213_R3584
65.1
RHH5241_R3613
199.5
RHH5270_R3642
83.0
Naive CD4 T-cell nTPM: 140.3
Samples: 4
Max nTPM: 199.3
Min nTPM: 73.2
RHH5306_R3672
199.3
RHH5214_R3585
105.2
RHH5242_R3614
183.6
RHH5271_R3643
73.2
Naive CD8 T-cell nTPM: 113.5
Samples: 4
Max nTPM: 147.5
Min nTPM: 89.3
RHH5201_R3572
89.3
RHH5229_R3601
90.7
RHH5258_R3630
126.3
RHH5287_R3659
147.5
Non-Vd2 gdTCR nTPM: 127.0
Samples: 4
Max nTPM: 211.0
Min nTPM: 83.4
RHH5235_R3607
86.1
RHH5264_R3636
127.3
RHH5207_R3578
83.4
RHH5299_R3665
211.0
T-reg nTPM: 128.0
Samples: 4
Max nTPM: 194.3
Min nTPM: 62.7
RHH5301_R3667
194.3
RHH5237_R3609
188.6
RHH5266_R3638
62.7
RHH5209_R3580
66.4
Terminal effector memory CD4 T-cell nTPM: 90.0
Samples: 2
Max nTPM: 108.6
Min nTPM: 71.4
RHH5243_R3615
71.4
RHH5272_R3644
108.6
Terminal effector memory CD8 T-cell nTPM: 140.4
Samples: 4
Max nTPM: 212.1
Min nTPM: 70.9
RHH5232_R3604
182.3
RHH5204_R3575
96.1
RHH5261_R3633
70.9
RHH5296_R3662
212.1
Vd2 gdTCR nTPM: 117.7
Samples: 4
Max nTPM: 186.5
Min nTPM: 74.3
RHH5234_R3606
129.2
RHH5206_R3577
74.3
RHH5263_R3635
80.6
RHH5298_R3664
186.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
