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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
86.7
nTPM
HPA Brain:
119.3
nTPM
GTEx:
86.7
nTPM
FANTOM5:
89.6
Scaled Tags Per Million
Pig:
101.4
nTPM
Mouse:
162.5
nTPM
Allen mouse:
14.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
119.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 117.6
2586
Male, age 75, left hemisphere
145.8
2019
Male, age 18, unknown
139.4
2411
Female, age 72, unknown
122.2
2666
Male, age 74, left hemisphere
116.8
1870
Female, age 42, unknown
110.7
1830
Male, age 51, unknown
110.2
1827
Male, age 72, unknown
109.4
2828
Female, age 72, unknown
109.0
2219
Male, age 76, both hemispheres
108.7
1833
Male, age 53, unknown
104.2
Dorsal raphe nucleus nTPM: 100.3
2750
Male, age 76, both hemispheres
114.5
1828
Male, age 53, unknown
111.0
2047
Male, age 72, unknown
97.3
2298
Female, age 72, unknown
92.3
2016
Female, age 72, unknown
86.3
Inferior colliculus nTPM: 98.7
1890
Male, age 53, unknown
106.4
2097
Female, age 72, unknown
103.2
1848
Female, age 42, unknown
94.9
2849
Male, age 72, unknown
90.4
Median raphe nucleus nTPM: 96.8
2220
Male, age 76, midline
96.8
Periaquaductal grey, anterior nTPM: 105.4
2502
Female, age 75, unknown
109.8
1947
Male, age 18, unknown
103.5
1795
Male, age 51, unknown
103.0
Periaquaductal grey, dorsal nTPM: 81.6
2464
Female, age 72, unknown
91.9
1831
Male, age 72, unknown
83.8
1840
Male, age 53, unknown
80.5
2850
Male, age 76, both hemispheres
70.4
Periaquaductal grey, lateral nTPM: 83.9
2053
Male, age 18, unknown
88.9
2272
Male, age 74, both hemispheres
88.6
2140
Male, age 76, both hemispheres
74.1
Pretectal area nTPM: 117.7
2007
Male, age 72, unknown
154.9
1816
Male, age 51, unknown
143.0
1817
Female, age 42, unknown
139.9
1815
Male, age 53, unknown
133.0
1944
Female, age 72, unknown
131.3
2407
Male, age 75, both hemispheres
115.6
2667
Female, age 75, unknown
115.2
2316
Male, age 76, right hemisphere
96.3
2224
Female, age 72, unknown
89.5
2273
Male, age 74, both hemispheres
88.8
2825
Male, age 18, unknown
86.8
Red nucleus nTPM: 119.1
2584
Male, age 75, left hemisphere
151.0
2785
Male, age 18, unknown
142.4
2588
Male, age 74, left hemisphere
126.6
2503
Female, age 72, unknown
115.9
2227
Male, age 72, unknown
115.8
1821
Female, age 72, unknown
115.5
1904
Male, age 53, unknown
114.5
2823
Male, age 76, right hemisphere
114.3
2769
Male, age 72, unknown
114.2
1865
Male, age 51, unknown
113.2
1954
Female, age 42, unknown
105.2
2725
Female, age 75, unknown
100.8
Substantia nigra nTPM: 119.3
2583
Male, age 75, right hemisphere
140.3
1889
Female, age 72, unknown
131.8
1851
Male, age 51, unknown
126.7
1916
Female, age 42, unknown
125.7
2590
Female, age 75, unknown
121.9
1941
Male, age 53, unknown
120.3
2665
Male, age 74, both hemispheres
112.7
2241
Male, age 72, unknown
111.8
2409
Female, age 72, unknown
104.7
2699
Male, age 18, unknown
97.6
Superior colliculus nTPM: 112.6
2668
Female, age 75, unknown
123.5
2261
Male, age 18, unknown
121.0
1913
Female, age 42, unknown
120.1
2664
Male, age 75, both hemispheres
118.0
2087
Female, age 72, unknown
116.1
1995
Male, age 72, unknown
108.9
2587
Male, age 74, left hemisphere
108.6
1796
Male, age 53, unknown
107.0
1895
Male, age 76, right hemisphere
104.9
1839
Male, age 51, unknown
97.7
Ventral tegmental area nTPM: 111.9
2410
Female, age 72, unknown
129.0
2223
Female, age 72, unknown
121.7
1942
Male, age 51, unknown
109.8
1915
Female, age 42, unknown
108.2
2218
Male, age 76, both hemispheres
105.3
2021
Male, age 53, unknown
97.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 86.7
Samples: 139
Max nTPM: 148.3
Min nTPM: 46.6
Std nTPM: 19.2
Median nTPM: 85.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
148.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
137.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
127.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
125.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
125.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
123.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
122.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
120.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
120.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
117.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
115.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
115.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
115.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
114.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
114.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
114.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
108.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
107.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
107.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
106.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
106.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
104.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
104.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
101.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
101.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
101.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
100.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
100.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
99.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
99.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
99.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
99.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
99.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
98.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
98.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
98.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
98.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
97.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
97.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
97.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
96.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
96.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
96.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
96.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
95.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
95.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
95.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
95.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
94.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
94.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
94.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
93.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
92.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
92.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
91.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
91.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
90.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
90.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
90.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
89.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
89.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
89.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
89.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
87.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
87.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
86.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
86.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
85.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
85.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
85.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
85.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
85.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
84.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
84.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
84.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
83.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
83.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
82.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
81.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
81.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
80.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
80.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
80.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
79.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
79.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
79.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
79.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
78.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
78.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
78.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
78.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
77.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
76.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
76.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
76.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
76.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
75.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
75.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
75.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
75.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
74.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
74.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
74.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
73.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
73.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
72.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
72.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
72.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
72.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
72.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
71.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
70.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
70.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
69.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
68.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
67.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
67.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
66.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
65.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
65.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
64.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
63.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
63.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
62.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
62.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
62.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
59.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
58.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
57.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
57.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
56.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
56.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
55.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
52.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
52.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
50.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
49.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
46.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 162.5
Samples: 4
Max nTPM: 168.5
Min nTPM: 158.8
Sample A
Male
158.8
Sample B
Male
160.2
Sample C
Female
162.6
Sample D
Female
168.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.