We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.2
nTPM
HPA Brain:
202.2
nTPM
GTEx:
92.2
nTPM
FANTOM5:
198.1
Scaled Tags Per Million
Pig:
289.1
nTPM
Mouse:
379.9
nTPM
Allen mouse:
17.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA031636
Antibody HPA076665
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
202.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 160.4
1898
Male, age 80, left hemisphere
229.6
2148
Female, age 91, left hemisphere
174.7
1855
Male, age 76, left hemisphere
160.0
2621
Female, age 67, right hemisphere
159.0
1911
Female, age 85, right hemisphere
122.6
2529
Female, age 94, left hemisphere
116.6
Dentate gyrus nTPM: 160.0
1927
Female, age 91, both hemispheres
234.9
2530
Female, age 94, left hemisphere
181.7
2528
Male, age 74, both hemispheres
153.1
2010
Male, age 76, both hemispheres
150.4
2246
Female, age 85, both hemispheres
148.8
2531
Female, age 67, both hemispheres
90.9
Entorhinal gyrus nTPM: 126.0
1938
Female, age 85, left hemisphere
145.7
2117
Female, age 91, right hemisphere
135.1
2764
Male, age 80, right hemisphere
134.1
2613
Female, age 94, left hemisphere
132.4
1787
Male, age 76, left hemisphere
119.7
2686
Male, age 75, right hemisphere
89.0
Hippocampus, CA1 nTPM: 202.2
2749
Male, age 80, left hemisphere
379.3
1873
Female, age 85, both hemispheres
217.3
2527
Male, age 74, both hemispheres
194.2
2082
Female, age 91, right hemisphere
130.4
2045
Male, age 76, both hemispheres
89.7
Hippocampus, CA2 nTPM: 162.0
1963
Male, age 80, left hemisphere
312.3
1892
Male, age 76, both hemispheres
188.2
2249
Male, age 74, both hemispheres
148.1
2113
Female, age 91, right hemisphere
125.7
2437
Female, age 94, left hemisphere
113.5
1940
Female, age 85, left hemisphere
84.3
Hippocampus, CA3 nTPM: 143.1
2137
Male, age 80, left hemisphere
269.1
2436
Male, age 74, both hemispheres
149.9
2620
Female, age 94, left hemisphere
123.1
2861
Female, age 67, both hemispheres
118.6
1867
Male, age 76, both hemispheres
104.4
1891
Female, age 85, both hemispheres
93.8
Parahippocampal cortex nTPM: 116.8
2245
Female, age 91, both hemispheres
175.6
2250
Female, age 67, right hemisphere
138.9
1990
Female, age 91, right hemisphere
131.6
1933
Female, age 85, both hemispheres
131.5
1850
Male, age 80, both hemispheres
124.6
2692
Male, age 74, both hemispheres
118.4
2693
Female, age 94, both hemispheres
111.1
2622
Female, age 67, right hemisphere
82.4
2018
Male, age 76, both hemispheres
81.9
2532
Female, age 72, left hemisphere
72.0
Perirhinal gyrus nTPM: 141.7
1847
Female, age 91, left hemisphere
229.8
1794
Male, age 80, right hemisphere
149.2
2521
Female, age 94, right hemisphere
143.5
1841
Female, age 85, right hemisphere
97.9
2848
Male, age 76, right hemisphere
88.3
Subiculum nTPM: 116.8
1901
Male, age 80, both hemispheres
144.7
2619
Male, age 74, both hemispheres
138.6
2729
Female, age 91, right hemisphere
119.6
1977
Female, age 85, both hemispheres
111.3
2042
Male, age 76, both hemispheres
95.4
2438
Female, age 94, left hemisphere
91.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 92.2
Samples: 197
Max nTPM: 294.0
Min nTPM: 9.6
Std nTPM: 54.7
Median nTPM: 83.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
294.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
282.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
270.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
262.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
249.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
226.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
214.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
210.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
209.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
200.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
194.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
190.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
185.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
184.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
180.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
180.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
177.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
175.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
172.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
169.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
168.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
167.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
165.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
164.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
162.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
162.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
153.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
149.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
145.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
144.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
142.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
137.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
137.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
136.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
132.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
131.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
130.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
129.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
128.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
127.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
127.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
126.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
126.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
125.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
122.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
121.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
120.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
119.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
118.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
118.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
118.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
115.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
113.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
113.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
112.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
111.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
109.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
107.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
107.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
106.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
106.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
106.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
105.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
104.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
103.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
103.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
103.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
102.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
100.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
99.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
97.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
97.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
97.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
95.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
95.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
94.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
94.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
94.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
93.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
91.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
90.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
90.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
90.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
90.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
89.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
88.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
88.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
88.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
88.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
87.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
87.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
85.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
85.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
84.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
84.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
83.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
83.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
83.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
83.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
82.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
81.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
81.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
80.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
80.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
80.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
78.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
78.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
77.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
77.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
77.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
73.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
73.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
73.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
73.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
73.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
72.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
72.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
70.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
69.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
69.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
69.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
68.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
67.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
67.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
67.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
66.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
66.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
65.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
65.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
64.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
64.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
63.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
62.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
62.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
61.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
61.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
60.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
60.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
59.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
58.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
57.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
57.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
56.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
56.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
56.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
56.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
55.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
53.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
52.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
52.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
52.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
51.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
51.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
50.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
49.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
49.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
47.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
46.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
45.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
44.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
43.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
43.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
43.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
42.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
42.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
41.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
37.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
37.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
37.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
36.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
35.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
34.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
34.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
33.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
32.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
32.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
32.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
31.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
30.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
29.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
27.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
27.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
26.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
24.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
23.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
23.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
21.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
20.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
19.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
18.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
17.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
15.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
14.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
10.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.6
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
379.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 178.8
Samples: 4
Max nTPM: 231.7
Min nTPM: 129.6
Sample A
Male
133.3
Sample B
Male
129.6
Sample C
Female
231.7
Sample D
Female
220.5
Hippocampal formation nTPM: 379.9
Samples: 4
Max nTPM: 409.0
Min nTPM: 343.8
Sample A
Male
343.8
Sample B
Male
409.0
Sample C
Female
395.2
Sample D
Female
371.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.