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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.2
nTPM
HPA Brain:
54.2
nTPM
GTEx:
35.2
nTPM
FANTOM5:
5.4
Scaled Tags Per Million
Pig:
97.5
nTPM
Mouse:
164.0
nTPM
Allen mouse:
18.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 29.7
2019
Male, age 18, unknown
65.0
2666
Male, age 74, left hemisphere
47.7
2411
Female, age 72, unknown
34.1
2219
Male, age 76, both hemispheres
30.1
1833
Male, age 53, unknown
25.0
1830
Male, age 51, unknown
24.4
1870
Female, age 42, unknown
23.3
1827
Male, age 72, unknown
20.2
2828
Female, age 72, unknown
14.4
2586
Male, age 75, left hemisphere
12.5
Dorsal raphe nucleus nTPM: 36.6
2298
Female, age 72, unknown
41.8
1828
Male, age 53, unknown
40.7
2750
Male, age 76, both hemispheres
38.3
2047
Male, age 72, unknown
37.3
2016
Female, age 72, unknown
24.7
Inferior colliculus nTPM: 40.6
2097
Female, age 72, unknown
45.5
1848
Female, age 42, unknown
43.1
2849
Male, age 72, unknown
38.1
1890
Male, age 53, unknown
35.6
Median raphe nucleus nTPM: 54.2
2220
Male, age 76, midline
54.2
Periaquaductal grey, anterior nTPM: 22.4
2502
Female, age 75, unknown
29.9
1947
Male, age 18, unknown
18.7
1795
Male, age 51, unknown
18.5
Periaquaductal grey, dorsal nTPM: 21.1
2850
Male, age 76, both hemispheres
29.8
2464
Female, age 72, unknown
21.5
1840
Male, age 53, unknown
19.0
1831
Male, age 72, unknown
14.2
Periaquaductal grey, lateral nTPM: 16.3
2140
Male, age 76, both hemispheres
23.9
2272
Male, age 74, both hemispheres
15.3
2053
Male, age 18, unknown
9.7
Pretectal area nTPM: 36.2
2007
Male, age 72, unknown
79.1
1817
Female, age 42, unknown
69.1
1944
Female, age 72, unknown
48.1
1816
Male, age 51, unknown
40.7
1815
Male, age 53, unknown
36.7
2667
Female, age 75, unknown
28.6
2224
Female, age 72, unknown
23.9
2316
Male, age 76, right hemisphere
22.8
2825
Male, age 18, unknown
20.9
2407
Male, age 75, both hemispheres
16.7
2273
Male, age 74, both hemispheres
11.3
Red nucleus nTPM: 32.3
2785
Male, age 18, unknown
59.5
2584
Male, age 75, left hemisphere
47.9
1821
Female, age 72, unknown
43.0
1954
Female, age 42, unknown
37.9
2227
Male, age 72, unknown
35.7
2769
Male, age 72, unknown
35.5
2503
Female, age 72, unknown
28.7
2823
Male, age 76, right hemisphere
28.7
1865
Male, age 51, unknown
27.2
1904
Male, age 53, unknown
21.6
2588
Male, age 74, left hemisphere
13.8
2725
Female, age 75, unknown
8.6
Substantia nigra nTPM: 30.8
1889
Female, age 72, unknown
70.2
1916
Female, age 42, unknown
42.0
1941
Male, age 53, unknown
40.5
2665
Male, age 74, both hemispheres
33.4
2241
Male, age 72, unknown
30.7
1851
Male, age 51, unknown
28.3
2699
Male, age 18, unknown
22.0
2409
Female, age 72, unknown
18.3
2590
Female, age 75, unknown
14.7
2583
Male, age 75, right hemisphere
8.3
Superior colliculus nTPM: 34.7
2668
Female, age 75, unknown
120.3
1895
Male, age 76, right hemisphere
52.7
2087
Female, age 72, unknown
40.7
1839
Male, age 51, unknown
29.0
2664
Male, age 75, both hemispheres
26.1
1796
Male, age 53, unknown
22.5
2261
Male, age 18, unknown
16.8
2587
Male, age 74, left hemisphere
15.0
1913
Female, age 42, unknown
13.3
1995
Male, age 72, unknown
11.2
Ventral tegmental area nTPM: 32.7
2218
Male, age 76, both hemispheres
42.8
2410
Female, age 72, unknown
37.2
1915
Female, age 42, unknown
33.2
2021
Male, age 53, unknown
32.3
1942
Male, age 51, unknown
28.8
2223
Female, age 72, unknown
21.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 35.2
Samples: 139
Max nTPM: 232.1
Min nTPM: 0.7
Std nTPM: 35.4
Median nTPM: 25.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
232.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
143.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
141.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
112.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
111.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
102.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
99.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
96.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
92.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
86.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
83.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
81.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
81.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
80.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
76.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
74.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
73.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
72.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
71.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
70.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
68.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
68.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
68.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
66.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
63.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
62.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
62.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
61.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
61.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
61.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
59.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
58.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
58.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
57.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
54.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
53.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
52.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
50.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
50.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
49.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
48.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
46.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
45.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
43.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
41.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
40.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
40.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
40.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
40.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
39.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
38.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
37.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
37.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
36.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
36.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
35.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
35.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
30.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
30.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
30.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
30.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
30.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
29.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
29.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
27.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
26.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
25.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
23.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
23.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
22.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
22.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
19.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
16.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
16.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
16.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
15.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
13.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
12.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
12.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
9.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
9.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
9.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
8.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
7.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
6.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
5.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
4.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
3.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
164.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 164.1
Samples: 4
Max nTPM: 173.3
Min nTPM: 155.8
Sample A
Male
161.5
Sample B
Male
155.8
Sample C
Female
173.3
Sample D
Female
165.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.