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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
76.6
nTPM
HPA Brain:
184.6
nTPM
GTEx:
76.6
nTPM
FANTOM5:
443.0
Scaled Tags Per Million
Pig:
120.2
nTPM
Mouse:
30.9
nTPM
Allen mouse:
4.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
184.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 140.8
1830
Male, age 51, unknown
177.6
1833
Male, age 53, unknown
176.3
2411
Female, age 72, unknown
173.6
1870
Female, age 42, unknown
156.9
2019
Male, age 18, unknown
145.6
2828
Female, age 72, unknown
140.8
2219
Male, age 76, both hemispheres
123.9
2666
Male, age 74, left hemisphere
112.4
2586
Male, age 75, left hemisphere
101.1
1827
Male, age 72, unknown
99.2
Dorsal raphe nucleus nTPM: 102.5
2750
Male, age 76, both hemispheres
194.0
2016
Female, age 72, unknown
100.4
1828
Male, age 53, unknown
95.9
2047
Male, age 72, unknown
62.1
2298
Female, age 72, unknown
59.9
Inferior colliculus nTPM: 91.1
2849
Male, age 72, unknown
110.3
1890
Male, age 53, unknown
93.5
1848
Female, age 42, unknown
91.1
2097
Female, age 72, unknown
69.5
Median raphe nucleus nTPM: 92.7
2220
Male, age 76, midline
92.7
Periaquaductal grey, anterior nTPM: 74.4
2502
Female, age 75, unknown
79.3
1947
Male, age 18, unknown
76.4
1795
Male, age 51, unknown
67.6
Periaquaductal grey, dorsal nTPM: 69.1
2464
Female, age 72, unknown
104.5
1831
Male, age 72, unknown
73.2
2850
Male, age 76, both hemispheres
53.0
1840
Male, age 53, unknown
45.5
Periaquaductal grey, lateral nTPM: 75.8
2272
Male, age 74, both hemispheres
97.0
2053
Male, age 18, unknown
81.1
2140
Male, age 76, both hemispheres
49.4
Pretectal area nTPM: 92.0
2316
Male, age 76, right hemisphere
124.8
1815
Male, age 53, unknown
124.0
2407
Male, age 75, both hemispheres
121.9
1817
Female, age 42, unknown
106.4
2825
Male, age 18, unknown
97.2
2007
Male, age 72, unknown
92.7
2667
Female, age 75, unknown
78.8
2273
Male, age 74, both hemispheres
75.9
2224
Female, age 72, unknown
73.5
1816
Male, age 51, unknown
58.5
1944
Female, age 72, unknown
58.2
Red nucleus nTPM: 184.6
1865
Male, age 51, unknown
229.0
1904
Male, age 53, unknown
212.4
2769
Male, age 72, unknown
202.3
2823
Male, age 76, right hemisphere
202.1
1821
Female, age 72, unknown
200.9
2227
Male, age 72, unknown
195.3
2785
Male, age 18, unknown
182.7
2503
Female, age 72, unknown
178.0
1954
Female, age 42, unknown
166.8
2588
Male, age 74, left hemisphere
160.0
2725
Female, age 75, unknown
149.7
2584
Male, age 75, left hemisphere
135.4
Substantia nigra nTPM: 105.0
2699
Male, age 18, unknown
131.8
2590
Female, age 75, unknown
127.0
2583
Male, age 75, right hemisphere
122.3
1851
Male, age 51, unknown
120.2
2409
Female, age 72, unknown
118.2
1889
Female, age 72, unknown
108.5
1941
Male, age 53, unknown
84.1
2665
Male, age 74, both hemispheres
81.8
1916
Female, age 42, unknown
78.6
2241
Male, age 72, unknown
77.3
Superior colliculus nTPM: 120.8
1995
Male, age 72, unknown
185.2
1913
Female, age 42, unknown
183.8
1895
Male, age 76, right hemisphere
153.8
2587
Male, age 74, left hemisphere
130.8
1839
Male, age 51, unknown
120.1
2668
Female, age 75, unknown
118.7
1796
Male, age 53, unknown
100.6
2664
Male, age 75, both hemispheres
76.0
2087
Female, age 72, unknown
71.6
2261
Male, age 18, unknown
67.0
Ventral tegmental area nTPM: 119.8
2223
Female, age 72, unknown
169.5
2410
Female, age 72, unknown
145.8
2021
Male, age 53, unknown
104.0
2218
Male, age 76, both hemispheres
102.8
1915
Female, age 42, unknown
99.8
1942
Male, age 51, unknown
97.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 76.6
Samples: 139
Max nTPM: 230.1
Min nTPM: 19.4
Std nTPM: 36.2
Median nTPM: 69.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
230.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
216.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
192.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
176.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
171.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
146.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
142.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
136.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
135.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
134.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
131.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
128.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
123.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
118.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
117.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
116.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
115.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
110.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
109.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
108.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
108.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
108.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
106.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
106.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
105.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
105.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
104.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
104.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
102.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
100.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
99.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
99.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
98.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
96.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
94.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
89.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
88.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
88.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
87.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
87.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
86.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
85.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
85.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
84.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
83.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
83.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
82.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
82.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
82.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
82.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
82.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
80.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
79.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
79.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
79.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
78.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
77.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
77.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
74.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
74.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
74.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
73.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
72.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
72.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
71.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
70.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
70.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
70.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
69.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
69.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
69.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
69.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
68.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
66.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
66.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
66.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
66.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
65.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
65.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
62.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
62.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
61.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
61.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
61.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
61.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
61.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
60.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
60.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
58.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
58.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
58.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
57.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
56.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
56.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
55.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
55.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
54.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
54.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
54.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
53.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
53.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
53.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
52.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
51.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
51.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
50.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
50.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
50.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
49.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
48.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
46.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
46.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
45.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
45.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
43.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
42.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
42.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
42.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
42.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
41.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
41.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
41.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
40.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
39.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
39.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
38.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
38.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
38.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
37.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
36.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
36.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
35.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
34.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
29.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
28.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
26.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30.9
Samples: 4
Max nTPM: 36.3
Min nTPM: 26.3
Sample A
Male
36.3
Sample B
Male
29.8
Sample C
Female
26.3
Sample D
Female
31.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.